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r1577
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reconstruct/ 992 (9 years ago) by jmduarteg: Removed unneeded code
modelit/ 1301 (8 years ago) by hstehr: overwriting default contactTypes.dat with the one needed for CMView release versions (only contains standard contact types). The old version with all esoteric contact types is renamed to contactTypes.all.dat
scripts/ 1485 (7 years ago) by jmduarteg: Adding downloading of uniref100
jars/ 1546 (7 years ago) by jmduarteg: Removing unused class and thus JRclient dependency
src/ 1577 (7 years ago) by jmduarteg: Important change in interface calculation: - another massive gain in run-time and memory usage: we first use the bounding boxes translations to see if it is worth translating the whole unit cells - thanks to that we now go to 2nd neighbors! (still performance is better than before with only 1st neighbors!). With that we fixed the long-standing bug by which we miss interfaces beyond the 1st neighbor - included a few examples of 2nd neighbor problem in test - re-done the symmetry redundancy elimination, it is there but it has a very little effect on overall performance. Now we only don't use an operator when we are very sure its partner was in the right place. In effect we could get rid of it because it wouldn't really affect the performance, we rather keep it as it is good to remember that there is a lot of symmetry redundancy
gpl.txt 974 (9 years ago) by duarte: Adding license files
LICENSE 974 (9 years ago) by duarte: Adding license files
.project 1347 (8 years ago) by hstehr: moving project CCCP to this repository
.classpath 1546 (7 years ago) by jmduarteg: Removing unused class and thus JRclient dependency
build.xml 1548 (7 years ago) by jmduarteg: New target jar-core-only (now default) which will build the default and core packages only and pack all jars except for the uniprot.jar
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