ViewVC Help
View Directory | Revision Log | Download Tarball | View Changeset | Root Listing
File Last Change
reconstruct/ 992 (10 years ago) by jmduarteg: Removed unneeded code
modelit/ 1301 (9 years ago) by hstehr: overwriting default contactTypes.dat with the one needed for CMView release versions (only contains standard contact types). The old version with all esoteric contact types is renamed to contactTypes.all.dat
scripts/ 1596 (7 years ago) by jmduarteg: Now using makeblastdb (for blast+) and also only getting by default uniref100
jars/ 1597 (7 years ago) by jmduarteg: Several changes related to blast: - now supporting blast+ blastp. - blast xml parser can now ignore the DTD url, avoiding unnecessary network access if desired - refactoring: legacy blast related stuff is now refactored to contain "legacy", runBlastp refers to blast+ Also updated uniprot jar.
src/ 1625 (7 years ago) by jmduarteg: Fixed issue: now setting unknown atom type whenever we can't guess the element. If we read from PDB file and there is an unguesseable atom that we then have to write out again the code would fail because in writeAtoms we assume we have atom types for everything.
gpl.txt 974 (10 years ago) by duarte: Adding license files
LICENSE 974 (10 years ago) by duarte: Adding license files
.project 1347 (9 years ago) by hstehr: moving project CCCP to this repository
.classpath 1546 (8 years ago) by jmduarteg: Removing unused class and thus JRclient dependency
build.xml 1548 (8 years ago) by jmduarteg: New target jar-core-only (now default) which will build the default and core packages only and pack all jars except for the uniprot.jar
         5 files shown


Name Value
svn:ignore .classpath .project .settings build