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r176
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proteinstructure/ 175 (12 years ago) by duarte: FIXED BUG in initialisation of fullLength when reading from file. In case of no sequence and nodes provided, was not getting correctly the maximum value for contacts. Now using the method getMaxContact from new class ContactList NEW FUNCTIONALITY in Graph: -New member variable modified -New methods addEdge, delEdge, restrictContactsToMaxRange, restrictContactsToMinRange, getContacts, getNodes, copy -Improved slightly the implementation of getEdgeNbh FIXED BUG in initialisation of fullLenght when reading from file. In case of no sequence and nodes provided, was not getting correctly the maximum value for contacts. Now using the method getMaxContact from ContactList New class ContactList NEW FUNCTIONALITY in Graph: -New member variable modified -New methods addEdge, delEdge, restrictContactsToMaxRange, restrictContactsToMinRange, getContacts, getNodes, copy -Improved slightly the implementation of getEdgeNbh New method getRange in Contact
tools/ 176 (12 years ago) by duarte: New static method getUserName and new constructor with only server and db
testPymolServer.java 24 (13 years ago) by stehr: moved executables (classes with main function) to root directory
makeNbhTbl.java 24 (13 years ago) by stehr: moved executables (classes with main function) to root directory
testClusterConnection.java 36 (13 years ago) by duarte: Now using constructor without key and createStatement with key, since createStatement without key is not allowed anymore (is now private)
testMySQLConnection.java 107 (13 years ago) by duarte: Initial commit, Hello World MySQLConnection program for newcomers
testPyMol.java 114 (12 years ago) by duarte: Initial commit. PyMol API script example, also using our PymolServerOutputStream to send commands directly to server
testGraph2Pml.java 116 (12 years ago) by filippis: testGraph2Pml.java fixed according to changes made in Msdsd2Pdb.java
minInfoGain.java 149 (12 years ago) by lappe: min-info - functional
listInfoLoss.java 160 (12 years ago) by lappe: tab-Formatted output added
testPdb.java 162 (12 years ago) by duarte: Updated test class for Pdb/Graph objects
Manifest.txt 163 (12 years ago) by stehr: added Manifest
listInfoGain.java 167 (12 years ago) by lappe:
exchangeOne.java 168 (12 years ago) by lappe:
maxInfoGain.java 169 (12 years ago) by lappe:
iterateNbhood.java 170 (12 years ago) by lappe: Running version, takes graph_id and resnr as input
iterateUpperNbhood.java 171 (12 years ago) by lappe: version of iterateNBHood for the uppercase background info pdb_reps_graph_4_2 for briefer output & calculation
iterateUpperNbs.java 173 (12 years ago) by lappe: running version summing delta Rank still to implement sum(deltza) for entropy etc.
iterateNbs.java 174 (12 years ago) by lappe: original version to be saved ...
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