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r1070
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src/ 1070 (9 years ago) by jmduarteg: Fixed bug in TcoffeeRunner. The t_coffee process was hanging after spawning. This didn't happen before, it can be related to the version of t_coffee (I'm using 8.14). Basically t_coffee seems to be doing something weird with stderr and stdout, java doesn't like it and makes the process hang (as usual java has a lot of problems in this area, see StreamGobbler class). The way to solve it is use the -quiet switch of t_coffee that can be used to redirect output to a file or have a complete quiet terminal.
scripts/ 1053 (9 years ago) by jmduarteg: New script to maintain a local copy of blastable uniprot sequences db.
reconstruct/ 992 (9 years ago) by jmduarteg: Removed unneeded code
jars/ 1040 (9 years ago) by jmduarteg: New UniprotConnection taken from Henning's structural impact project (lots of new jar dependencies with that). New EmblWSDBFetchConnection class to get sequences from EMBL web services.
gpl.txt 974 (9 years ago) by duarte: Adding license files
Manifest.txt 968 (9 years ago) by duarte: Updated make-aglappe script (and renamed to make-owl). Changed aglappe strings to OWL (following new name of library)
LICENSE 974 (9 years ago) by duarte: Adding license files
.project 1065 (9 years ago) by hstehr: reverting changes to .project and .classpath which were accidentally committed
.classpath 1065 (9 years ago) by hstehr: reverting changes to .project and .classpath which were accidentally committed
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svn:ignore .classpath .project .settings