 ../
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src/
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1324
(10 years ago)
by jmduarteg:
A few bug fixes and improvements in pdb data parsing.
- bug fix: in some cases exptl method field has more than 1 value (e.g. 2krl). In cif files this was causing a null pointer. We now parse it properly (taking first one as the exptl method) in both cif and pdb files
- improved very slightly the cif file parser moving out of loops the index getters
- drop fullLength as a field in Pdb, now we have only getFullLength()
- pdb file atom parsing is now column based and not regex based (hopefully will make it slightly faster)
- now parsing the element column of pdb files: now the atom type detection comes from the appropriate field in pdb/cif/pdbase. If in pdb file and not present we still try to guess it as before
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scripts/
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1289
(10 years ago)
by jmduarteg:
Introduced constant for formatdb executable
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reconstruct/
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992
(10 years ago)
by jmduarteg:
Removed unneeded code
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modelit/
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1301
(10 years ago)
by hstehr:
overwriting default contactTypes.dat with the one needed for CMView release versions (only contains standard contact types). The old version with all esoteric contact types is renamed to contactTypes.all.dat
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jars/
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1309
(10 years ago)
by jmduarteg:
New jar for uniprot JAPI
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gpl.txt
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974
(11 years ago)
by duarte:
Adding license files
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Manifest.txt
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968
(11 years ago)
by duarte:
Updated make-aglappe script (and renamed to make-owl).
Changed aglappe strings to OWL (following new name of library)
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LICENSE
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974
(11 years ago)
by duarte:
Adding license files
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.project
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1065
(10 years ago)
by hstehr:
reverting changes to .project and .classpath which were accidentally committed
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.classpath
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1291
(10 years ago)
by cvehlow:
Control database access! for CGAP
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