 ../
|
tools/
|
203
(12 years ago)
by duarte:
Using apache xmlrpc version 3.0 in PyMolServerOutputStream
|
|
proteinstructure/
|
305
(11 years ago)
by duarte:
Got rid of useless (and potential bug) chainCode=getChainCode (self reference!)
|
writeTargetMoves.java
|
298
(12 years ago)
by lappe:
only one out of both BB/SC insertion per moves based
on sc/bb domin. out of temp shell
|
|
testPymolServer.java
|
203
(12 years ago)
by duarte:
Using apache xmlrpc version 3.0 in PyMolServerOutputStream
|
|
testPyMol.java
|
114
(12 years ago)
by duarte:
Initial commit. PyMol API script example, also using our PymolServerOutputStream to send commands directly to server
|
|
testPdb.java
|
215
(12 years ago)
by stehr:
some clean up of exceptions in Pdb and Graph classes:
merged PdbAcCodeNotFoundError and MsdAcCodeNotFoundError into PdbCodeNotFoundError,
created new PdbChainCodeNotFound, got rid of stderr output, throwing exceptions with informative messages instead
|
|
testMySQLConnection.java
|
202
(12 years ago)
by duarte:
MySQLConnection now throwing SQLException on connect
Many files changed following this: all calling classes now re-throwing or catching the SQLException
|
|
testGraph2Pml.java
|
116
(12 years ago)
by filippis:
testGraph2Pml.java fixed according to changes made in Msdsd2Pdb.java
|
|
testClusterConnection.java
|
202
(12 years ago)
by duarte:
MySQLConnection now throwing SQLException on connect
Many files changed following this: all calling classes now re-throwing or catching the SQLException
|
|
scoreTargetMoves.java
|
300
(12 years ago)
by lappe:
Faster version that writes to stdoutput, minor changes
|
|
rewriteNBHood_parallel.java
|
291
(12 years ago)
by lappe:
1st version scoring with pdb_reps_graph_4_2 and full nbhood string
|
|
rewriteNBHood.java
|
299
(12 years ago)
by lappe:
only one out of both BB/SC insertion per moves based
on sc/bb domin. out of temp shell
|
|
minInfoGain.java
|
202
(12 years ago)
by duarte:
MySQLConnection now throwing SQLException on connect
Many files changed following this: all calling classes now re-throwing or catching the SQLException
|
|
maxInfoGain.java
|
202
(12 years ago)
by duarte:
MySQLConnection now throwing SQLException on connect
Many files changed following this: all calling classes now re-throwing or catching the SQLException
|
|
makeNbhTbl.java
|
24
(13 years ago)
by stehr:
moved executables (classes with main function) to root directory
|
|
listInfoLoss.java
|
202
(12 years ago)
by duarte:
MySQLConnection now throwing SQLException on connect
Many files changed following this: all calling classes now re-throwing or catching the SQLException
|
|
listInfoGain.java
|
202
(12 years ago)
by duarte:
MySQLConnection now throwing SQLException on connect
Many files changed following this: all calling classes now re-throwing or catching the SQLException
|
|
iterateUpperNbs.java
|
268
(12 years ago)
by lappe:
|
|
iterateUpperNbhood.java
|
202
(12 years ago)
by duarte:
MySQLConnection now throwing SQLException on connect
Many files changed following this: all calling classes now re-throwing or catching the SQLException
|
|
iterateNbs.java
|
202
(12 years ago)
by duarte:
MySQLConnection now throwing SQLException on connect
Many files changed following this: all calling classes now re-throwing or catching the SQLException
|
|
iterateNbhood.java
|
202
(12 years ago)
by duarte:
MySQLConnection now throwing SQLException on connect
Many files changed following this: all calling classes now re-throwing or catching the SQLException
|
|
iterEvalNbhood.java
|
269
(12 years ago)
by lappe:
|
|
hashIterNbhood.java
|
267
(12 years ago)
by lappe:
|
|
genGraph.java
|
285
(12 years ago)
by duarte:
Fixed a few bugs in reading of list file
Better output and error messages
|
|
genDbGraph.java
|
285
(12 years ago)
by duarte:
Fixed a few bugs in reading of list file
Better output and error messages
|
|
compareCMs.java
|
215
(12 years ago)
by stehr:
some clean up of exceptions in Pdb and Graph classes:
merged PdbAcCodeNotFoundError and MsdAcCodeNotFoundError into PdbCodeNotFoundError,
created new PdbChainCodeNotFound, got rid of stderr output, throwing exceptions with informative messages instead
|
|
cnex1.java
|
265
(12 years ago)
by lappe:
final version
incl. pessimistic tie-break
|
|
cnHashIterNbhood.java
|
266
(12 years ago)
by lappe:
|
|
cnEvalTargetNbhood.java
|
271
(12 years ago)
by lappe:
|
|
cnCoarseNbhood.java
|
272
(12 years ago)
by lappe:
|
|
calculateGridDensity.java
|
303
(11 years ago)
by stehr:
added writeResultsToFile()
|
|
benchmarkGraphAlgorithm.java
|
254
(12 years ago)
by duarte:
Also writing graph to file
|
|
Manifest.txt
|
230
(12 years ago)
by stehr:
added class NodeSet
|
