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filippis |
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#!/bin/sh |
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function usage { |
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echo |
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echo "Script to assign id to each possible single model type. " |
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echo |
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echo "Usage: $1 -d <db> " |
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echo "<db> the database where single model types will be stored" |
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echo |
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} |
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# |
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#Set default value for variables |
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# |
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db="" |
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table="single_model" |
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file="single_model.txt" |
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while getopts d: opt |
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do |
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case "$opt" in |
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d) db="$OPTARG";; |
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esac |
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done |
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if [ -z "$db" ] |
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then |
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echo "Missing arguments" |
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usage $0 |
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exit 1 |
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fi |
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arch=`uname -m` |
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case "$arch" in |
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i686) |
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mysqldir=/project/tla/dist/mysql-i686 |
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;; |
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x86_64) |
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mysqldir=/project/tla/dist/mysql |
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;; |
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*) |
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mysqldir=/project/tla/dist/mysql-i686 |
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;; |
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esac |
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mysqlbin=$mysqldir/bin/mysql |
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h=white |
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$mysqlbin -pnieve -h $h -B -N $db <<ENDSQL |
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SET sql_mode = "NO_UNSIGNED_SUBTRACTION,TRADITIONAL"; |
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SELECT 'Creating the single model table if not exists ...'; |
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CREATE TABLE IF NOT EXISTS $table ( |
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single_model_id INT NOT NULL AUTO_INCREMENT PRIMARY KEY, |
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dist DECIMAL(4,2) NOT NULL, |
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expBB TINYINT NOT NULL, |
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CW VARCHAR(16) NOT NULL, |
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CT VARCHAR(16) NOT NULL, |
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CR VARCHAR(80) NOT NULL, |
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d TINYINT(1) NOT NULL, |
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UNIQUE INDEX DESCRIPTION_IDX (dist, expBB, CW, CT, CR, d) |
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) ENGINE=MyISAM; |
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ENDSQL |
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contactType="Ca Cb Ca/Cb Ca+Cb+Ca/Cb BB SC BB/SC BB+SC+BB/SC Ca+SC" |
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#(true) : no filtering |
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#((i_cid!=j_cid)OR(abs(i_num-j_num)>=2)) : remove backbone connectivity |
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#((i_cid!=j_cid)OR(abs(i_num-j_num)>=4)) : remove short range edges |
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#((i_cid!=j_cid)OR(abs(i_num-j_num)>=10)) : remove short and medium range edges |
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contactRange="(true) \ |
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((i_cid!=j_cid)OR(abs(i_num-j_num)>=2)) \ |
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((i_cid!=j_cid)OR(abs(i_num-j_num)>=4)) \ |
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filippis |
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((i_cid!=j_cid)OR(abs(i_num-j_num)>=10)) \ |
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((i_sstype!=j_sstype)OR(i_ssid!=j_ssid))" |
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filippis |
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echo "Outputing the models..." |
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echo -n "" > $file |
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first=`seq 2 0.5 4` |
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fours=`seq 4.1 0.1 4.9` |
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last=`seq 5 0.5 20` |
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contactDistance=`echo "$first $fours $last"` |
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for dist in $contactDistance |
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do |
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for ct in $contactType |
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do |
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for cr in $contactRange |
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do |
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for expBB in -1 0 |
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do |
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#unweighted, undirected |
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echo -e "${dist}\t${expBB}\t1\t${ct}\t${cr}\t0" >> $file |
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#unweighted, directed |
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echo -e "${dist}\t${expBB}\t1\t${ct}\t${cr}\t1" >> $file |
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#weighted, undirected |
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echo -e "${dist}\t${expBB}\t${ct}\t${ct}\t${cr}\t0" >> $file |
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#weighted, directed |
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echo -e "${dist}\t${expBB}\t${ct}\t${ct}\t${cr}\t1" >> $file |
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done |
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done |
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done |
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done |
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$mysqlbin -pnieve -h $h -B -N $db <<ENDSQL |
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SELECT 'Loading the data...'; |
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SET sql_mode = "NO_UNSIGNED_SUBTRACTION,TRADITIONAL"; |
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LOAD DATA LOCAL INFILE "$file" IGNORE INTO TABLE $table (dist, expBB, CW, CT, CR, d); |
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ENDSQL |
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rm -f $file |