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root/owl/trunk/make-aglappe.sh
Revision: 712
Committed: Mon Aug 4 15:00:57 2008 UTC (11 years, 2 months ago) by duarte
File size: 1711 byte(s)
Log Message:
Switching to JUNG2-beta1:
- got rid of our custom fix to removeEdge
- now both addVertex and removeVertex are correctly implemented: they update properly the nodes2serials map. 
Line User Rev File contents
1 duarte 496 #!/bin/sh
2     if [ -z "$2" ]
3     then
4     echo "usage: make-aglappe.sh <tempdir> <aglappetag>"
5     echo "if instead of a tag, you want the code from trunk, just specify 'trunk' instead of the tag name"
6     exit
7     fi
8    
9    
10     tempdir=$1
11     aglappetag=$2
12    
13 duarte 712 CLASSPATH=.:/project/StruPPi/jars/mysql-connector-java.jar:\
14     /project/StruPPi/jars/JRclient-RE817.jar:\
15     /project/StruPPi/jars/java-getopt-1.0.13.jar:\
16     /project/StruPPi/jars/junit-3.8.1.jar:\
17     /project/StruPPi/jars/commons-codec-1.3.jar:\
18     /project/StruPPi/jars/xmlrpc-client-3.0.jar:\
19     /project/StruPPi/jars/xmlrpc-common-3.0.jar:\
20     /project/StruPPi/jars/ws-commons-util-1.0.1.jar:\
21     /project/StruPPi/jars/vecmath.jar:\
22     /project/StruPPi/jars/Jama-1.0.2.jar:\
23     /project/StruPPi/jars/jaligner.jar:\
24     /project/StruPPi/jars/jung/collections-generic-4.01.jar:\
25     /project/StruPPi/jars/jung/jung-api-2.0-beta1.jar:\
26     /project/StruPPi/jars/jung/jung-graph-impl-2.0-beta1.jar:\
27     /project/StruPPi/jars/jung/jung-algorithms-2.0-beta1.jar
28 duarte 496
29     cd $tempdir
30    
31     if [ -e "$aglappetag" ]
32     then
33     echo "File exists with name $cmviewtag or name $aglappetag, can't create directory"
34     exit 1
35     fi
36    
37     # exporting from svn
38     echo "Exporting source from svn"
39    
40    
41     if [ "$aglappetag" = "trunk" ]
42     then
43     aglappetag="aglappe-trunk"
44     svn export file:///project/StruPPi/svn/aglappe/trunk/ $aglappetag
45     else
46     svn export file:///project/StruPPi/svn/aglappe/tags/$aglappetag
47     fi
48    
49    
50     # compiling
51     echo "Compiling..."
52     cd $aglappetag
53 duarte 591 javac *.java proteinstructure/*.java tools/*.java tinker/*.java sadp/*.java sequence/*.java actionTools/*.java ppi/*.java
54 duarte 496
55     # creating jar file
56     echo "Creating jar file: $aglappetag.jar ..."
57     jar -cfm ../$aglappetag.jar Manifest.txt .
58    
59     # removing $aglappetag temp directory
60     cd ..
61     rm -rf $aglappetag