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#!/bin/sh |
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< |
if [ -z "$3" ] |
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if [ -z "$2" ] |
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then |
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echo "Usage: make-owl.sh <svn base url> <tempdir> <tag>" |
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echo "If instead of a tag, you want the code from trunk, just specify 'trunk' instead of the tag name" |
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echo "e.g. for svn base url: svn://black/aglappe or svn://www.bioinformatics.org/svnroot/owl" |
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echo "Usage: make-owl.sh <svn url> <tempdir>" |
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echo "e.g. for svn url: svn://black/aglappe/trunk or svn://www.bioinformatics.org/svnroot/owl/tags/owl-1.2.0" |
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exit |
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fi |
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svnbaseurl=$1 |
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svnurl=$1 |
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tempdir=$2 |
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tag=$3 |
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echo "Compiling with:" |
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javac -version |
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echo "" |
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CLASSPATH=.:\ |
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/project/StruPPi/jars/mysql-connector-java.jar:\ |
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/project/StruPPi/jars/JRclient-RE817.jar:\ |
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/project/StruPPi/jars/java-getopt-1.0.13.jar:\ |
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/project/StruPPi/jars/junit-3.8.1.jar:\ |
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/project/StruPPi/jars/commons-codec-1.3.jar:\ |
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/project/StruPPi/jars/xmlrpc-client-3.1.jar:\ |
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/project/StruPPi/jars/xmlrpc-common-3.1.jar:\ |
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/project/StruPPi/jars/ws-commons-util-1.0.2.jar:\ |
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/project/StruPPi/jars/vecmath.jar:\ |
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/project/StruPPi/jars/Jama-1.0.2.jar:\ |
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/project/StruPPi/jars/jaligner.jar:\ |
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/project/StruPPi/jars/drmaa.jar:\ |
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/project/StruPPi/jars/jung/collections-generic-4.01.jar:\ |
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/project/StruPPi/jars/jung/jung-2.0.1/jung-api-2.0.1.jar:\ |
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/project/StruPPi/jars/jung/jung-2.0.1/jung-graph-impl-2.0.1.jar:\ |
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/project/StruPPi/jars/jung/jung-2.0.1/jung-algorithms-2.0.1.jar |
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cd $tempdir |
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if [ -e "$tag" ] |
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then |
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echo "File exists with name $tag, can't create directory" |
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exit 1 |
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fi |
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tag=`basename $svnurl` |
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# exporting from svn |
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echo "Exporting source from svn" |
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if [ "$tag" = "trunk" ] |
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svn export $svnurl |
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if [ "$?" -ne "0" ] |
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then |
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tag="owl-trunk" |
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svn export $svnbaseurl/trunk/ $tag |
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else |
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svn export $svnbaseurl/tags/$tag |
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echo "Couldn't export from svn. Exiting" |
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exit 1 |
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fi |
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# compiling |
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echo "Compiling..." |
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cd $tag/src |
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jarfiles=`ls ../jars/*.jar` |
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CLASSPATH="." |
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for jarfile in $jarfiles |
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do |
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CLASSPATH="$jarfile:$CLASSPATH" |
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done |
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echo $CLASSPATH |
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javac *.java proteinstructure/*.java tools/*.java tinker/*.java sadp/*.java sequence/*.java actionTools/*.java ppi/*.java |
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# creating jar file |
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# removing $tag temp directory |
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cd ../.. |
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rm -rf $tag |
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#rm -rf $tag |
