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root/owl/trunk/modelit/scripts/plot_simmatrix.sh
Revision: 1299
Committed: Tue Jan 11 17:38:33 2011 UTC (8 years, 8 months ago) by hstehr
File size: 417 byte(s)
Log Message:
adding Model-It server files to repository
Line File contents
1 #!/bin/sh
2 # Visualize a similarity matrix written by aglappe.BlastUtils.writeClusterGraph
3 # Henning Stehr, h.stehr@molgen.mpg.de
4 # 10/Apr/2008
5
6 if [ -z "$2" ]
7 then
8 echo "Usage: $0 <in.matrix> <out.ps>"
9 exit 1
10 fi
11
12 infile=$1
13 outfile=$2
14
15 cmd="x <- read.table(\"$infile\"); library(lattice); levelplot(as.matrix(x));plot(hclust(as.dist(x)))#;heatmap(as.matrix(x))"
16 echo $cmd | R -q --vanilla
17 mv -f Rplots.ps $outfile

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