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Revision 134 - Directory Listing
Modified Mon May 14 07:52:10 2007 UTC (12 years, 5 months ago) by duarte
Implemented basic reading contacts from file
Revision 133 - Directory Listing
Modified Fri May 11 09:37:38 2007 UTC (12 years, 5 months ago) by duarte
New functionality: now can create a Pdb object passing a model serial for NMR structures. Not implemented when reading from pdb files!
Revision 131 - Directory Listing
Modified Thu May 10 15:53:14 2007 UTC (12 years, 5 months ago) by duarte
2 new convenience methods: getBoolMatrix and getIntMatrix
Got rid of method to print constraint equations, was useless
Revision 130 - Directory Listing
Modified Thu May 10 15:52:24 2007 UTC (12 years, 5 months ago) by duarte
NEW FEATURE: reading pdb data from msdsd
New classes MsdsdInfo and its exception classes
FIXED BUG in dump2pdbfile in Pdb: was not sorting the atom lines
Revision 129 - Directory Listing
Modified Thu May 10 13:12:32 2007 UTC (12 years, 5 months ago) by duarte
NEW FUNCTIONALITY: can retrieve now a ContactMap object from a Graph object
New method getCM in Graph. New member variables: sequence, accode, chain, nodes, directed
Passing more data from Pdb to Graph in get_graph
New constructor in ContactMap
Revision 128 - Directory Listing
Modified Wed May 9 16:29:39 2007 UTC (12 years, 5 months ago) by duarte
ContactMap and EdgeState classes moved here from CMPredict repository
Revision 127 - Directory Listing
Modified Wed May 9 14:54:02 2007 UTC (12 years, 5 months ago) by duarte
Implemented read of pdb data from pdb file.
FIXED BUG in dumping of pdb file. Was missing end of line in atom lines
Added more tests in testPdb

Revision 126 - Directory Listing
Modified Wed May 9 12:04:35 2007 UTC (12 years, 5 months ago) by duarte
MYSQLUSER now taken from unix name with new getUserName method
Revision 124 - Directory Listing
Modified Wed May 9 11:57:24 2007 UTC (12 years, 5 months ago) by duarte
Added error handling for PdbaseInfo: 2 new exception classes
Revision 123 - Directory Listing
Added Wed May 9 10:45:53 2007 UTC (12 years, 5 months ago) by duarte
Initial commit of the proteinstructure package. Contains classes to use pdb protein structures