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root/owl/trunk/proteinstructure
r134
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Contact.java 123 (12 years ago) by duarte: Initial commit of the proteinstructure package. Contains classes to use pdb protein structures
PdbaseInconsistencyError.java 124 (12 years ago) by duarte: Added error handling for PdbaseInfo: 2 new exception classes
PdbaseAcCodeNotFoundError.java 124 (12 years ago) by duarte: Added error handling for PdbaseInfo: 2 new exception classes
AA.java 126 (12 years ago) by duarte: MYSQLUSER now taken from unix name with new getUserName method
EdgeState.java 128 (12 years ago) by duarte: ContactMap and EdgeState classes moved here from CMPredict repository
MsdsdAcCodeNotFoundError.java 130 (12 years ago) by duarte: NEW FEATURE: reading pdb data from msdsd New classes MsdsdInfo and its exception classes FIXED BUG in dump2pdbfile in Pdb: was not sorting the atom lines
MsdsdInconsistentResidueNumbersError.java 130 (12 years ago) by duarte: NEW FEATURE: reading pdb data from msdsd New classes MsdsdInfo and its exception classes FIXED BUG in dump2pdbfile in Pdb: was not sorting the atom lines
ContactMap.java 131 (12 years ago) by duarte: 2 new convenience methods: getBoolMatrix and getIntMatrix Got rid of method to print constraint equations, was useless
MsdsdInfo.java 133 (12 years ago) by duarte: New functionality: now can create a Pdb object passing a model serial for NMR structures. Not implemented when reading from pdb files!
PdbaseInfo.java 133 (12 years ago) by duarte: New functionality: now can create a Pdb object passing a model serial for NMR structures. Not implemented when reading from pdb files!
Pdb.java 133 (12 years ago) by duarte: New functionality: now can create a Pdb object passing a model serial for NMR structures. Not implemented when reading from pdb files!
Graph.java 134 (12 years ago) by duarte: Implemented basic reading contacts from file
(Current path doesn't exist after revision 950)
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