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r500
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ContactType.java 492 (11 years ago) by duarte: Copied the aglappe-jung branch into trunk.
PdbfileFormatError.java 492 (11 years ago) by duarte: Copied the aglappe-jung branch into trunk.
IntPairSet.java 492 (11 years ago) by duarte: Copied the aglappe-jung branch into trunk.
GraphIdNotFoundError.java 492 (11 years ago) by duarte: Copied the aglappe-jung branch into trunk.
MsdsdPdb.java 492 (11 years ago) by duarte: Copied the aglappe-jung branch into trunk.
RIGCommonNbhood.java 492 (11 years ago) by duarte: Copied the aglappe-jung branch into trunk.
contactTypes.dat 492 (11 years ago) by duarte: Copied the aglappe-jung branch into trunk.
NbhoodBackgrnd.java 492 (11 years ago) by duarte: Copied the aglappe-jung branch into trunk.
RIGNbhood.java 492 (11 years ago) by duarte: Copied the aglappe-jung branch into trunk.
FileTypeGuesser.java 492 (11 years ago) by duarte: Copied the aglappe-jung branch into trunk.
CatalyticSite.java 492 (11 years ago) by duarte: Copied the aglappe-jung branch into trunk.
Box.java 492 (11 years ago) by duarte: Copied the aglappe-jung branch into trunk.
RIGNode.java 492 (11 years ago) by duarte: Copied the aglappe-jung branch into trunk.
PdbChainCodeNotFoundError.java 492 (11 years ago) by duarte: Copied the aglappe-jung branch into trunk.
AAinfo.java 492 (11 years ago) by duarte: Copied the aglappe-jung branch into trunk.
MsdsdInconsistentResidueNumbersError.java 492 (11 years ago) by duarte: Copied the aglappe-jung branch into trunk.
PredEval.java 492 (11 years ago) by duarte: Copied the aglappe-jung branch into trunk.
FileFormatError.java 492 (11 years ago) by duarte: Copied the aglappe-jung branch into trunk.
RIGEdge.java 492 (11 years ago) by duarte: Copied the aglappe-jung branch into trunk.
Scop.java 492 (11 years ago) by duarte: Copied the aglappe-jung branch into trunk.
PdbCodeNotFoundError.java 492 (11 years ago) by duarte: Copied the aglappe-jung branch into trunk.
PdbaseInconsistencyError.java 492 (11 years ago) by duarte: Copied the aglappe-jung branch into trunk.
ConformationsNotSameSizeError.java 492 (11 years ago) by duarte: Copied the aglappe-jung branch into trunk.
IntervalSet.java 492 (11 years ago) by duarte: Copied the aglappe-jung branch into trunk.
GraphFileFormatError.java 492 (11 years ago) by duarte: Copied the aglappe-jung branch into trunk.
ECRegion.java 492 (11 years ago) by duarte: Copied the aglappe-jung branch into trunk.
GraphIOGDLFile.java 492 (11 years ago) by duarte: Copied the aglappe-jung branch into trunk.
ScopRegion.java 492 (11 years ago) by duarte: Copied the aglappe-jung branch into trunk.
DbRIGraph.java 492 (11 years ago) by duarte: Copied the aglappe-jung branch into trunk.
PdbLoadError.java 492 (11 years ago) by duarte: Copied the aglappe-jung branch into trunk.
aapairsBounds.dat 492 (11 years ago) by duarte: Copied the aglappe-jung branch into trunk.
CaspRRFileData.java 492 (11 years ago) by duarte: Copied the aglappe-jung branch into trunk.
IntPairComparator.java 492 (11 years ago) by duarte: Copied the aglappe-jung branch into trunk.
PairwiseAlignmentConverter.java 492 (11 years ago) by duarte: Copied the aglappe-jung branch into trunk.
NbhProbDistribution.java 492 (11 years ago) by duarte: Copied the aglappe-jung branch into trunk.
FastaFileFormatError.java 492 (11 years ago) by duarte: Copied the aglappe-jung branch into trunk.
CatalSiteSet.java 492 (11 years ago) by duarte: Copied the aglappe-jung branch into trunk.
SecondaryStructure.java 492 (11 years ago) by duarte: Copied the aglappe-jung branch into trunk.
PdbasePdb.java 492 (11 years ago) by duarte: Copied the aglappe-jung branch into trunk.
CiffileFormatError.java 492 (11 years ago) by duarte: Copied the aglappe-jung branch into trunk.
AIGNode.java 492 (11 years ago) by duarte: Copied the aglappe-jung branch into trunk.
GraphIODb.java 492 (11 years ago) by duarte: Copied the aglappe-jung branch into trunk.
SecStrucElement.java 492 (11 years ago) by duarte: Copied the aglappe-jung branch into trunk.
CiffilePdb.java 492 (11 years ago) by duarte: Copied the aglappe-jung branch into trunk.
MaxClusterRunner.java 492 (11 years ago) by duarte: Copied the aglappe-jung branch into trunk.
AlignmentConstructionError.java 492 (11 years ago) by duarte: Copied the aglappe-jung branch into trunk.
AIGEdge.java 492 (11 years ago) by duarte: Copied the aglappe-jung branch into trunk.
PirFileFormatError.java 492 (11 years ago) by duarte: Copied the aglappe-jung branch into trunk.
PdbfilePdb.java 492 (11 years ago) by duarte: Copied the aglappe-jung branch into trunk.
AIGraph.java 492 (11 years ago) by duarte: Copied the aglappe-jung branch into trunk.
Interval.java 492 (11 years ago) by duarte: Copied the aglappe-jung branch into trunk.
EC.java 492 (11 years ago) by duarte: Copied the aglappe-jung branch into trunk.
RIGEnsemble.java 495 (11 years ago) by stehr: added main function and loading from Multi-model PDB files
Pdb.java 497 (11 years ago) by duarte: Extracted some constants: NO_PDB_CODE, NO_PDB_CHAIN_CODE, NO_CONTACT_TYPE, NO_CUTOFF
ProtStructGraph.java 497 (11 years ago) by duarte: Extracted some constants: NO_PDB_CODE, NO_PDB_CHAIN_CODE, NO_CONTACT_TYPE, NO_CUTOFF
FileRIGraph.java 497 (11 years ago) by duarte: Extracted some constants: NO_PDB_CODE, NO_PDB_CHAIN_CODE, NO_CONTACT_TYPE, NO_CUTOFF
CaspRRFileRIGraph.java 497 (11 years ago) by duarte: Extracted some constants: NO_PDB_CODE, NO_PDB_CHAIN_CODE, NO_CONTACT_TYPE, NO_CUTOFF
RIGraph.java 498 (11 years ago) by duarte: Now also copying the CASP RR identifier fields in RIGraph.copy() and in PairwiseAlignmentGraphConverter.converGraph().
PairwiseAlignmentGraphConverter.java 498 (11 years ago) by duarte: Now also copying the CASP RR identifier fields in RIGraph.copy() and in PairwiseAlignmentGraphConverter.converGraph().
PairwiseSequenceAlignment.java 499 (11 years ago) by duarte: Got rid of check for equality of tags
Alignment.java 500 (11 years ago) by duarte: New functionality: now we can get sequences and reset tags based on the order the sequences appear on the file.
(Current path doesn't exist after revision 950)
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