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root/owl/trunk/proteinstructure
r172
File Last Change (rev)
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PdbaseInconsistencyError.java 172 (12 years ago) by duarte: Got rid of some unnecessary warnings
MsdsdInfo.java 172 (12 years ago) by duarte: Got rid of some unnecessary warnings
MsdsdAcCodeNotFoundError.java 172 (12 years ago) by duarte: Got rid of some unnecessary warnings
GraphIdNotFoundError.java 172 (12 years ago) by duarte: Got rid of some unnecessary warnings
PdbaseAcCodeNotFoundError.java 172 (12 years ago) by duarte: Got rid of some unnecessary warnings
MsdsdInconsistentResidueNumbersError.java 172 (12 years ago) by duarte: Got rid of some unnecessary warnings
Graph.java 165 (12 years ago) by duarte: New functionality: added methods to get node/edge neighbours
Pdb.java 159 (12 years ago) by duarte: Moved ContactMap and EdgeState out of this repository. Extra functionality of ContactMap now in Graph: - new member variables fullLength, obsLength, numContacts. New method getIntMatrix - removed getCM method
PdbaseInfo.java 135 (12 years ago) by duarte: NEW FUNCTIONALITY: reading of graph from db is fully implemented for all cases New chain member variable in the Info classes, read in get_asym_id (Pdbase) and in get_chain_id (Msdsd) Reading chain also in Pdb in read_pdb_data_from_file Not reading chain anymore in read_atomData of PdbaseInfo Added oneletter2threeletter and getoneletter2threeletter to AA class Changes in Graph: - added db static vars and getUserName method - new member variables graphid and sm_id - new method read_graph_from_db to read contacts, nodes (and sequence from nodes) from db - new method getgraphid New Exception class GraphIdNotFoundError
AA.java 135 (12 years ago) by duarte: NEW FUNCTIONALITY: reading of graph from db is fully implemented for all cases New chain member variable in the Info classes, read in get_asym_id (Pdbase) and in get_chain_id (Msdsd) Reading chain also in Pdb in read_pdb_data_from_file Not reading chain anymore in read_atomData of PdbaseInfo Added oneletter2threeletter and getoneletter2threeletter to AA class Changes in Graph: - added db static vars and getUserName method - new member variables graphid and sm_id - new method read_graph_from_db to read contacts, nodes (and sequence from nodes) from db - new method getgraphid New Exception class GraphIdNotFoundError
Contact.java 123 (12 years ago) by duarte: Initial commit of the proteinstructure package. Contains classes to use pdb protein structures
(Current path doesn't exist after revision 950)
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