ViewVC Help
View Directory | Revision Log | Download Tarball | View Changeset | Root Listing
root/owl/trunk/proteinstructure
r190
File (rev) Last Change
 ../
PdbaseInfo.java 190 (12 years ago) by duarte: NEW FEATURE: mapping of pdb residue serials and internal serials in the Pdb object
PdbaseInconsistencyError.java 172 (12 years ago) by duarte: Got rid of some unnecessary warnings
PdbaseAcCodeNotFoundError.java 172 (12 years ago) by duarte: Got rid of some unnecessary warnings
Pdb.java 190 (12 years ago) by duarte: NEW FEATURE: mapping of pdb residue serials and internal serials in the Pdb object
NodeNbh.java 186 (12 years ago) by duarte: FIXED BUG: The returned regex in motif2regex was wrong, needed a ".*" at the beginning
NbhProbDistribution.java 183 (12 years ago) by duarte: Fixed bug: calculateEntropy was wrong when a pi was 0
MsdsdInfo.java 190 (12 years ago) by duarte: NEW FEATURE: mapping of pdb residue serials and internal serials in the Pdb object
MsdsdInconsistentResidueNumbersError.java 172 (12 years ago) by duarte: Got rid of some unnecessary warnings
MsdsdAcCodeNotFoundError.java 172 (12 years ago) by duarte: Got rid of some unnecessary warnings
GraphIdNotFoundError.java 172 (12 years ago) by duarte: Got rid of some unnecessary warnings
Graph.java 189 (12 years ago) by duarte: Added basic compare method to the Graph class and test class compareCMs
GenericContact.java 185 (12 years ago) by duarte: Implemented hashCode method in Contact and GenericContact. Was necessary to use these classes as keys in Maps Fixed bug in equals method in GenericContact Changed middle character from "\t" to " " in toString
EdgeNbh.java 179 (12 years ago) by duarte: FIXED BUG: fixed restrictContactsToMax/MinRange. Couldn't delete contacts at the same time as looping in them NEW CLASSES NodeNbh and EdgeNbh, now used in getNodeNbh and getEdgeNbh New method getResidueType
ContactList.java 178 (12 years ago) by duarte: Fixed bug in getMaxRange method, was not assigning to the max variable Added toString method to Contact
Contact.java 185 (12 years ago) by duarte: Implemented hashCode method in Contact and GenericContact. Was necessary to use these classes as keys in Maps Fixed bug in equals method in GenericContact Changed middle character from "\t" to " " in toString
AA.java 135 (12 years ago) by duarte: NEW FUNCTIONALITY: reading of graph from db is fully implemented for all cases New chain member variable in the Info classes, read in get_asym_id (Pdbase) and in get_chain_id (Msdsd) Reading chain also in Pdb in read_pdb_data_from_file Not reading chain anymore in read_atomData of PdbaseInfo Added oneletter2threeletter and getoneletter2threeletter to AA class Changes in Graph: - added db static vars and getUserName method - new member variables graphid and sm_id - new method read_graph_from_db to read contacts, nodes (and sequence from nodes) from db - new method getgraphid New Exception class GraphIdNotFoundError
(Current path doesn't exist after revision 950)
         16 files shown