trunk/reconstruct/reconstruct.sh

#!/bin/sh
# shell script to run the reconstruct program (a java class in the default package of the OWL Java library)

# If the program is to be used on a cluster through the Sun Grid Engine 
# job scheduler (option -A) this variable needs to be set to wherever the
# root of the local installation of SGE is
sgeroot=/usr/local/sge

exedir=`dirname $0`

jarfiles=`ls $exedir/jars/*.jar`
CLASSPATH="."
for jarfile in $jarfiles
do
        CLASSPATH="$jarfile:$CLASSPATH"
done


if [ -e "$sgeroot/util/arch" ] 
then
        arch=`$sgeroot/util/arch`
        libstr="-Djava.library.path=$sgeroot/lib/$arch"
else
        libstr=""
fi

java $libstr reconstruct $@
Revision:	978
Committed:	Tue Feb 23 18:57:24 2010 UTC (10 years, 11 months ago) by duarte
File size:	631 byte(s)
Log Message:	Moved all reconstruct scripts and config files to reconstruct directory. Modified scripts accordingly
Line	User	Rev	File contents
1	duarte	975	#!/bin/sh
2			# shell script to run the reconstruct program (a java class in the default package of the OWL Java library)
3
4			# If the program is to be used on a cluster through the Sun Grid Engine
5			# job scheduler (option -A) this variable needs to be set to wherever the
6			# root of the local installation of SGE is
7			sgeroot=/usr/local/sge
8
9			exedir=`dirname $0`
10
11			jarfiles=`ls $exedir/jars/*.jar`
12			CLASSPATH="."
13			for jarfile in $jarfiles
14			do
15			CLASSPATH="$jarfile:$CLASSPATH"
16			done
17
18
19
20			if [ -e "$sgeroot/util/arch" ]
21			then
22			arch=`$sgeroot/util/arch`
23			libstr="-Djava.library.path=$sgeroot/lib/$arch"
24			else
25			libstr=""
26			fi
27
28			java $libstr reconstruct $@