trunk/scripts/make-owl.sh

#!/bin/sh
if [ -z "$2" ]
then
    echo "Usage: make-owl.sh <svn url> <tempdir>"
    echo "e.g. for svn url: svn://black/aglappe/trunk or svn://www.bioinformatics.org/svnroot/owl/tags/owl-1.2.0"
    exit
fi

svnurl=$1
tempdir=$2

echo "Compiling with:"
javac -version
echo ""


cd $tempdir

tag=`basename $svnurl` 


# exporting from svn
echo "Exporting source from svn"
svn export $svnurl
if [ "$?" -ne "0" ]
then
        echo "Couldn't export from svn. Exiting"
        exit 1
fi


# compiling
echo "Compiling..."
cd $tag/src


jarfiles=`ls ../jars/*.jar`
CLASSPATH="."
for jarfile in $jarfiles
do
        CLASSPATH="$jarfile:$CLASSPATH"
done
jarfiles=`ls ../jars/uniprot/*.jar`
for jarfile in $jarfiles
do
        CLASSPATH="$jarfile:$CLASSPATH"
done

echo $CLASSPATH


javac \
*.java \
owl/core/structure/*.java \
owl/core/structure/graphs/*.java \
owl/core/structure/scoring/*.java \
owl/core/sequence/*.java  \
owl/core/sequence/alignment/*.java \
owl/core/util/*.java  \
owl/core/util/actionTools/*.java \
owl/core/connections/*.java \
owl/core/connections/pisa/*.java \
owl/core/features/*.java \
owl/core/runners/*.java \
owl/core/runners/blast/*.java \
owl/core/runners/tinker/*.java 

# creating jar file
echo "Creating jar file: $tag.jar ..."
jar -cfm ../../$tag.jar ../Manifest.txt .

# removing $tag temp directory
cd ../..
rm -rf $tag
Revision:	1156
Committed:	Wed Jul 7 13:18:24 2010 UTC (10 years, 9 months ago) by jmduarteg
File size:	1328 byte(s)
Log Message:	More fixes to build script
Line	User	Rev	File contents
1	duarte	496	#!/bin/sh
2	duarte	971	if [ -z "$2" ]
3	duarte	496	then
4	duarte	971	echo "Usage: make-owl.sh <svn url> <tempdir>"
5			echo "e.g. for svn url: svn://black/aglappe/trunk or svn://www.bioinformatics.org/svnroot/owl/tags/owl-1.2.0"
6	duarte	496	exit
7			fi
8
9	duarte	971	svnurl=$1
10	duarte	968	tempdir=$2
11	duarte	496
12	duarte	968	echo "Compiling with:"
13			javac -version
14			echo ""
15	duarte	496
16
17			cd $tempdir
18
19	duarte	971	tag=`basename $svnurl`
20	duarte	496
21	duarte	971
22	duarte	496	# exporting from svn
23			echo "Exporting source from svn"
24	duarte	971	svn export $svnurl
25			if [ "$?" -ne "0" ]
26	duarte	496	then
27	duarte	971	echo "Couldn't export from svn. Exiting"
28			exit 1
29	duarte	496	fi
30
31
32			# compiling
33			echo "Compiling..."
34	duarte	968	cd $tag/src
35	duarte	971
36
37			jarfiles=`ls ../jars/*.jar`
38			CLASSPATH="."
39			for jarfile in $jarfiles
40			do
41			CLASSPATH="$jarfile:$CLASSPATH"
42			done
43	jmduarteg	1152	jarfiles=`ls ../jars/uniprot/*.jar`
44			for jarfile in $jarfiles
45			do
46			CLASSPATH="$jarfile:$CLASSPATH"
47			done
48	duarte	971
49			echo $CLASSPATH
50
51
52	jmduarteg	1152	javac \
53			*.java \
54			owl/core/structure/*.java \
55	jmduarteg	1156	owl/core/structure/graphs/*.java \
56			owl/core/structure/scoring/*.java \
57	jmduarteg	1152	owl/core/sequence/*.java \
58	jmduarteg	1156	owl/core/sequence/alignment/*.java \
59	jmduarteg	1152	owl/core/util/*.java \
60	jmduarteg	1156	owl/core/util/actionTools/*.java \
61	jmduarteg	1152	owl/core/connections/*.java \
62	jmduarteg	1156	owl/core/connections/pisa/*.java \
63	jmduarteg	1152	owl/core/features/*.java \
64	jmduarteg	1156	owl/core/runners/*.java \
65			owl/core/runners/blast/*.java \
66			owl/core/runners/tinker/*.java
67	duarte	496
68			# creating jar file
69	duarte	968	echo "Creating jar file: $tag.jar ..."
70			jar -cfm ../../$tag.jar ../Manifest.txt .
71	duarte	496
72	duarte	968	# removing $tag temp directory
73			cd ../..
74	duarte	972	rm -rf $tag