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root/owl/trunk/scripts/make-owl.sh
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# Line 52 | Line 52
52   javac \
53   *.java \
54   owl/core/structure/*.java \
55 + owl/core/structure/graphs/*.java \
56 + owl/core/structure/scoring/*.java \
57   owl/core/sequence/*.java  \
58 + owl/core/sequence/alignment/*.java \
59   owl/core/util/*.java  \
60 + owl/core/util/actionTools/*.java \
61   owl/core/connections/*.java \
62 + owl/core/connections/pisa/*.java \
63   owl/core/features/*.java \
64 < owl/core/runners/*.java
64 > owl/core/runners/*.java \
65 > owl/core/runners/blast/*.java \
66 > owl/core/runners/tinker/*.java
67  
68   # creating jar file
69   echo "Creating jar file: $tag.jar ..."

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