../
|
embed/
|
962
(10 years ago)
by gmueller:
minor changes, that now fit into the renewed version
|
proteinstructure/
|
961
(10 years ago)
by duarte:
Now analyseHistone will output the coordinates of the side chains of ARGs (NH1 atom) and LYSs (NZ atom) instead of the CA atoms.
Some new methods in Pdb
|
tests/
|
959
(10 years ago)
by duarte:
Moved IntervalTest class to test.tools package
|
features/
|
958
(10 years ago)
by duarte:
Moved Interval* and IntPair* classes to tools package
|
tools/
|
958
(10 years ago)
by duarte:
Moved Interval* and IntPair* classes to tools package
|
graphAveraging/
|
958
(10 years ago)
by duarte:
Moved Interval* and IntPair* classes to tools package
|
sadp/
|
958
(10 years ago)
by duarte:
Moved Interval* and IntPair* classes to tools package
|
tinker/
|
958
(10 years ago)
by duarte:
Moved Interval* and IntPair* classes to tools package
|
sequence/
|
951
(10 years ago)
by duarte:
Reorganised the project with a src folder for java source files.
Added a jars dir with all jars needed for the project.
Added .project and .classpath pointing to relative path of jars.
The project should now work out of the box after a check-out with eclipse. No need to setup external jars or anything.
|
ppi/
|
951
(10 years ago)
by duarte:
Reorganised the project with a src folder for java source files.
Added a jars dir with all jars needed for the project.
Added .project and .classpath pointing to relative path of jars.
The project should now work out of the box after a check-out with eclipse. No need to setup external jars or anything.
|
deltaRank/
|
951
(10 years ago)
by duarte:
Reorganised the project with a src folder for java source files.
Added a jars dir with all jars needed for the project.
Added .project and .classpath pointing to relative path of jars.
The project should now work out of the box after a check-out with eclipse. No need to setup external jars or anything.
|
actionTools/
|
951
(10 years ago)
by duarte:
Reorganised the project with a src folder for java source files.
Added a jars dir with all jars needed for the project.
Added .project and .classpath pointing to relative path of jars.
The project should now work out of the box after a check-out with eclipse. No need to setup external jars or anything.
|
litNet/
|
951
(10 years ago)
by duarte:
Reorganised the project with a src folder for java source files.
Added a jars dir with all jars needed for the project.
Added .project and .classpath pointing to relative path of jars.
The project should now work out of the box after a check-out with eclipse. No need to setup external jars or anything.
|
analyseHistone.java
|
961
(10 years ago)
by duarte:
Now analyseHistone will output the coordinates of the side chains of ARGs (NH1 atom) and LYSs (NZ atom) instead of the CA atoms.
Some new methods in Pdb
|
scorePdbSet.java
|
960
(10 years ago)
by duarte:
New executable class from my workspace.
|
reconstruct.java
|
958
(10 years ago)
by duarte:
Moved Interval* and IntPair* classes to tools package
|
calcVolsAndSurfs.java
|
957
(10 years ago)
by duarte:
Added some useful tools to the default package from my workspace. More clean up.
|
checkChirality.java
|
957
(10 years ago)
by duarte:
Added some useful tools to the default package from my workspace. More clean up.
|
genGraph.java
|
953
(10 years ago)
by duarte:
Refactoring of inconsistently named methods in RIGraph
|
benchmarkGraphAlgorithm.java
|
953
(10 years ago)
by duarte:
Refactoring of inconsistently named methods in RIGraph
|
testPdb.java
|
953
(10 years ago)
by duarte:
Refactoring of inconsistently named methods in RIGraph
|
genDbGraph.java
|
953
(10 years ago)
by duarte:
Refactoring of inconsistently named methods in RIGraph
|
averageGraph.java
|
953
(10 years ago)
by duarte:
Refactoring of inconsistently named methods in RIGraph
|
testDbRIGraph.java
|
953
(10 years ago)
by duarte:
Refactoring of inconsistently named methods in RIGraph
|
compareCMs.java
|
953
(10 years ago)
by duarte:
Refactoring of inconsistently named methods in RIGraph
|
testPymolServer.java
|
951
(10 years ago)
by duarte:
Reorganised the project with a src folder for java source files.
Added a jars dir with all jars needed for the project.
Added .project and .classpath pointing to relative path of jars.
The project should now work out of the box after a check-out with eclipse. No need to setup external jars or anything.
|
testClusterConnection.java
|
951
(10 years ago)
by duarte:
Reorganised the project with a src folder for java source files.
Added a jars dir with all jars needed for the project.
Added .project and .classpath pointing to relative path of jars.
The project should now work out of the box after a check-out with eclipse. No need to setup external jars or anything.
|
testMySQLConnection.java
|
951
(10 years ago)
by duarte:
Reorganised the project with a src folder for java source files.
Added a jars dir with all jars needed for the project.
Added .project and .classpath pointing to relative path of jars.
The project should now work out of the box after a check-out with eclipse. No need to setup external jars or anything.
|
computeEnergies.java
|
951
(10 years ago)
by duarte:
Reorganised the project with a src folder for java source files.
Added a jars dir with all jars needed for the project.
Added .project and .classpath pointing to relative path of jars.
The project should now work out of the box after a check-out with eclipse. No need to setup external jars or anything.
|
superimposeMult.java
|
951
(10 years ago)
by duarte:
Reorganised the project with a src folder for java source files.
Added a jars dir with all jars needed for the project.
Added .project and .classpath pointing to relative path of jars.
The project should now work out of the box after a check-out with eclipse. No need to setup external jars or anything.
|
addSeq2Mcma.java
|
951
(10 years ago)
by duarte:
Reorganised the project with a src folder for java source files.
Added a jars dir with all jars needed for the project.
Added .project and .classpath pointing to relative path of jars.
The project should now work out of the box after a check-out with eclipse. No need to setup external jars or anything.
|
compareAlignments.java
|
951
(10 years ago)
by duarte:
Reorganised the project with a src folder for java source files.
Added a jars dir with all jars needed for the project.
Added .project and .classpath pointing to relative path of jars.
The project should now work out of the box after a check-out with eclipse. No need to setup external jars or anything.
|
mirrorIt.java
|
951
(10 years ago)
by duarte:
Reorganised the project with a src folder for java source files.
Added a jars dir with all jars needed for the project.
Added .project and .classpath pointing to relative path of jars.
The project should now work out of the box after a check-out with eclipse. No need to setup external jars or anything.
|
writeSASAtoBFactor.java
|
951
(10 years ago)
by duarte:
Reorganised the project with a src folder for java source files.
Added a jars dir with all jars needed for the project.
Added .project and .classpath pointing to relative path of jars.
The project should now work out of the box after a check-out with eclipse. No need to setup external jars or anything.
|
mapMutations.java
|
951
(10 years ago)
by duarte:
Reorganised the project with a src folder for java source files.
Added a jars dir with all jars needed for the project.
Added .project and .classpath pointing to relative path of jars.
The project should now work out of the box after a check-out with eclipse. No need to setup external jars or anything.
|
testPyMol.java
|
951
(10 years ago)
by duarte:
Reorganised the project with a src folder for java source files.
Added a jars dir with all jars needed for the project.
Added .project and .classpath pointing to relative path of jars.
The project should now work out of the box after a check-out with eclipse. No need to setup external jars or anything.
|
testJUNGframework.java
|
951
(10 years ago)
by duarte:
Reorganised the project with a src folder for java source files.
Added a jars dir with all jars needed for the project.
Added .project and .classpath pointing to relative path of jars.
The project should now work out of the box after a check-out with eclipse. No need to setup external jars or anything.
|
dumppdb.java
|
951
(10 years ago)
by duarte:
Reorganised the project with a src folder for java source files.
Added a jars dir with all jars needed for the project.
Added .project and .classpath pointing to relative path of jars.
The project should now work out of the box after a check-out with eclipse. No need to setup external jars or anything.
|
scoreDecoys.java
|
951
(10 years ago)
by duarte:
Reorganised the project with a src folder for java source files.
Added a jars dir with all jars needed for the project.
Added .project and .classpath pointing to relative path of jars.
The project should now work out of the box after a check-out with eclipse. No need to setup external jars or anything.
|
runMD.java
|
951
(10 years ago)
by duarte:
Reorganised the project with a src folder for java source files.
Added a jars dir with all jars needed for the project.
Added .project and .classpath pointing to relative path of jars.
The project should now work out of the box after a check-out with eclipse. No need to setup external jars or anything.
|
alignSeq.java
|
951
(10 years ago)
by duarte:
Reorganised the project with a src folder for java source files.
Added a jars dir with all jars needed for the project.
Added .project and .classpath pointing to relative path of jars.
The project should now work out of the box after a check-out with eclipse. No need to setup external jars or anything.
|
pairwiseSeqId.java
|
951
(10 years ago)
by duarte:
Reorganised the project with a src folder for java source files.
Added a jars dir with all jars needed for the project.
Added .project and .classpath pointing to relative path of jars.
The project should now work out of the box after a check-out with eclipse. No need to setup external jars or anything.
|
calculateGridDensity.java
|
951
(10 years ago)
by duarte:
Reorganised the project with a src folder for java source files.
Added a jars dir with all jars needed for the project.
Added .project and .classpath pointing to relative path of jars.
The project should now work out of the box after a check-out with eclipse. No need to setup external jars or anything.
|
dumpseq.java
|
951
(10 years ago)
by duarte:
Reorganised the project with a src folder for java source files.
Added a jars dir with all jars needed for the project.
Added .project and .classpath pointing to relative path of jars.
The project should now work out of the box after a check-out with eclipse. No need to setup external jars or anything.
|
writePerAtomDistancesToBFactor.java
|
951
(10 years ago)
by duarte:
Reorganised the project with a src folder for java source files.
Added a jars dir with all jars needed for the project.
Added .project and .classpath pointing to relative path of jars.
The project should now work out of the box after a check-out with eclipse. No need to setup external jars or anything.
|