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r1048
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litNet/ 1007 (9 years ago) by hstehr: refactoring: moved casp, deltaRank, embed, graphAveraging, ppi, sadp to owl
ppi/ 1007 (9 years ago) by hstehr: refactoring: moved casp, deltaRank, embed, graphAveraging, ppi, sadp to owl
sadp/ 1009 (9 years ago) by hstehr: refactoring: moved many many classes to more appropriate packages; created new packages owl.core.sequence.alignment, owl.core.structure.alignment, owl.core.structure.features
casp/ 1009 (9 years ago) by hstehr: refactoring: moved many many classes to more appropriate packages; created new packages owl.core.sequence.alignment, owl.core.structure.alignment, owl.core.structure.features
decoyScoring/ 1009 (9 years ago) by hstehr: refactoring: moved many many classes to more appropriate packages; created new packages owl.core.sequence.alignment, owl.core.structure.alignment, owl.core.structure.features
embed/ 1018 (9 years ago) by hstehr: removing a warning in owl.embed.contactmaps.Demes
deltaRank/ 1037 (9 years ago) by matt4077: adding phi/psi constraints to edges
gmbp/ 1039 (9 years ago) by cvehlow: New class gmbp for handling (saving) angle (theta-phi) ranges for certain contacts (iNum-jNum combinations);
tests/ 1042 (9 years ago) by jmduarteg: New SiftsConnection and SiftsFeature classes for SIFTS pdb to uniprot mapping. Implemented the HasFeatures interface in Pdb. In the future we can hopefully use that mechanism for all features (sec. strucuture, scop and so on)
graphAveraging/ 1047 (9 years ago) by jmduarteg: SecondaryStructure now implements Iterable after refactoring of getIterator
core/ 1048 (9 years ago) by jmduarteg: New classes UniprotHomolog and UniprotHomologList to contain a set of homologs of a given sequence, including the blast hit data, embl cds coding sequences etc.
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