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r1217
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litNet/ 1007 (9 years ago) by hstehr: refactoring: moved casp, deltaRank, embed, graphAveraging, ppi, sadp to owl
ppi/ 1007 (9 years ago) by hstehr: refactoring: moved casp, deltaRank, embed, graphAveraging, ppi, sadp to owl
deltaRank/ 1057 (9 years ago) by matt4077: add psi/phi constraints from secondary structure to tinker reconstructions
sadp/ 1084 (9 years ago) by matt4077: renamed conflicting ContactMap class.
graphAveraging/ 1170 (9 years ago) by hstehr: adding secondary structure functions to RIGEnsemble and GraphAverager: GraphAverager can now use DSSP to get consensus secondary structure from underlying structures.
embed/ 1202 (9 years ago) by hstehr: suppress "method not used" warning
casp/ 1208 (9 years ago) by cvehlow: Scoring:KendallsTau-method added to Statistics
decoyScoring/ 1208 (9 years ago) by cvehlow: Scoring:KendallsTau-method added to Statistics
gmbp/ 1210 (9 years ago) by cvehlow: Changes to select certain Secondary Structure Type for Traces extraction!
core/ 1217 (9 years ago) by jmduarteg: First fully working version (this time hopefully for real...) of interface enumeration. Works for many examples, still there are problems in many others due to area discrepancies with pisa, but those are minor things. The elimination of duplicates is based on chain codes and number of contacting atoms, it is of course possible that 2 different interfaces happen to have the same chain codes and same number of contacting atoms (but unlikely). Would need a more fine grained comparison. New test class to compare automatically to PISA output.
tests/ 1217 (9 years ago) by jmduarteg: First fully working version (this time hopefully for real...) of interface enumeration. Works for many examples, still there are problems in many others due to area discrepancies with pisa, but those are minor things. The elimination of duplicates is based on chain codes and number of contacting atoms, it is of course possible that 2 different interfaces happen to have the same chain codes and same number of contacting atoms (but unlikely). Would need a more fine grained comparison. New test class to compare automatically to PISA output.
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