 ../
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litNet/
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1007
(9 years ago)
by hstehr:
refactoring: moved casp, deltaRank, embed, graphAveraging, ppi, sadp to owl
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ppi/
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1007
(9 years ago)
by hstehr:
refactoring: moved casp, deltaRank, embed, graphAveraging, ppi, sadp to owl
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deltaRank/
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1057
(9 years ago)
by matt4077:
add psi/phi constraints from secondary structure to tinker reconstructions
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sadp/
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1084
(9 years ago)
by matt4077:
renamed conflicting ContactMap class.
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graphAveraging/
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1170
(9 years ago)
by hstehr:
adding secondary structure functions to RIGEnsemble and GraphAverager: GraphAverager can now use DSSP to get consensus secondary structure from underlying structures.
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decoyScoring/
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1208
(9 years ago)
by cvehlow:
Scoring:KendallsTau-method added to Statistics
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casp/
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1223
(9 years ago)
by hstehr:
updated classes for evaluating our CASP predictions
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gmbp/
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1224
(9 years ago)
by cvehlow:
added methods
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embed/
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1227
(9 years ago)
by gmueller:
new methods added
-method, takes care of row and column index maps (refreshMatrix())
-methods, adding or removing entries, without refreshing index mapping
-norm methods(norm1(), norm2(), normInf()) as well as a special innerProduct() method
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tests/
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1230
(9 years ago)
by jmduarteg:
Fixed bug: bsa values were wrongly calculated.
Now sort of interfaces is always descending.
Some more testing for individual residues asa and bsa values.
Still an issue: individual bsas are not matching pisa's even though total interface areas are fine.
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core/
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1232
(9 years ago)
by hstehr:
Merging (yet again) my personal UniProtConnection with owl.core.connections.UniProtConnection; new features: Methods for retrieving cross references for PDB and PhosphoSitePlus
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