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r1333
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litNet/ 1007 (9 years ago) by hstehr: refactoring: moved casp, deltaRank, embed, graphAveraging, ppi, sadp to owl
ppi/ 1007 (9 years ago) by hstehr: refactoring: moved casp, deltaRank, embed, graphAveraging, ppi, sadp to owl
graphAveraging/ 1305 (8 years ago) by jmduarteg: Renaming all xxxxError named exceptions to xxxxException. Long overdue thing (was historical because it came from python). Learnt just recently that java does have a concept of Error too.
sadp/ 1305 (8 years ago) by jmduarteg: Renaming all xxxxError named exceptions to xxxxException. Long overdue thing (was historical because it came from python). Learnt just recently that java does have a concept of Error too.
deltaRank/ 1314 (8 years ago) by jmduarteg: Finally got rid of all duplicated amino acid methods in AAinfo. Now everything unified in AminoAcid enum.
gmbp/ 1326 (8 years ago) by jmduarteg: Renamed xxxxError classes to xxxxException as they should be.
casp/ 1326 (8 years ago) by jmduarteg: Renamed xxxxError classes to xxxxException as they should be.
embed/ 1326 (8 years ago) by jmduarteg: Renamed xxxxError classes to xxxxException as they should be.
decoyScoring/ 1326 (8 years ago) by jmduarteg: Renamed xxxxError classes to xxxxException as they should be.
tests/ 1332 (8 years ago) by jmduarteg: Another fix to PdbfilePdb parser. Now it is more robust with bad formatting, tested on a whole tar ball of CASP predictions. Added the CASP predictions test set to tests.
core/ 1333 (8 years ago) by jmduarteg: Important change: for maximum compatibility in no-SEQRES case we are now back to using the existing numbering if there's nothing wrong with it (no negatives or ins codes). If there's something wrong with numbering then we set the SEQRES to be the observed sequence and renumber. Now behaviour is as it was before revision 1329. With the difference that a lot more PDB files can be read.
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