 ../
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tests/
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1225
(9 years ago)
by jmduarteg:
Now elimination of redundant interfaces not based only on count of edges, but also on identity of each of the contacts (atom's serials, atom codes, residue serials, residue types). Added more test cases. Seems to be working fine.
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sadp/
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1084
(10 years ago)
by matt4077:
renamed conflicting ContactMap class.
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ppi/
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1007
(10 years ago)
by hstehr:
refactoring: moved casp, deltaRank, embed, graphAveraging, ppi, sadp to owl
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litNet/
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1007
(10 years ago)
by hstehr:
refactoring: moved casp, deltaRank, embed, graphAveraging, ppi, sadp to owl
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graphAveraging/
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1170
(9 years ago)
by hstehr:
adding secondary structure functions to RIGEnsemble and GraphAverager: GraphAverager can now use DSSP to get consensus secondary structure from underlying structures.
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gmbp/
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1224
(9 years ago)
by cvehlow:
added methods
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embed/
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1227
(9 years ago)
by gmueller:
new methods added
-method, takes care of row and column index maps (refreshMatrix())
-methods, adding or removing entries, without refreshing index mapping
-norm methods(norm1(), norm2(), normInf()) as well as a special innerProduct() method
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deltaRank/
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1057
(10 years ago)
by matt4077:
add psi/phi constraints from secondary structure to tinker reconstructions
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decoyScoring/
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1208
(9 years ago)
by cvehlow:
Scoring:KendallsTau-method added to Statistics
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core/
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1226
(9 years ago)
by hstehr:
Refactoring of SiftsConnection and SiftsFeature, now implementing Uniprot2Pdb
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casp/
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1223
(9 years ago)
by hstehr:
updated classes for evaluating our CASP predictions
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