ViewVC Help
View Directory | Revision Log | Download Tarball | View Changeset | Root Listing
File (rev) Last Change
tools/ 1009 (10 years ago) by hstehr: refactoring: moved many many classes to more appropriate packages; created new packages owl.core.sequence.alignment, owl.core.structure.alignment, owl.core.structure.features
pipeline/ 1070 (10 years ago) by jmduarteg: Fixed bug in TcoffeeRunner. The t_coffee process was hanging after spawning. This didn't happen before, it can be related to the version of t_coffee (I'm using 8.14). Basically t_coffee seems to be doing something weird with stderr and stdout, java doesn't like it and makes the process hang (as usual java has a lot of problems in this area, see StreamGobbler class). The way to solve it is use the -quiet switch of t_coffee that can be used to redirect output to a file or have a complete quiet terminal.
benchmarking/ 1173 (10 years ago) by hstehr: minor modifications to casp benchmarking script
         0 files shown