Revision
1070 -
Directory Listing
Modified
Wed May 19 16:20:42 2010 UTC
(10 years, 8 months ago)
by
jmduarteg
Fixed bug in TcoffeeRunner. The t_coffee process was hanging after spawning. This didn't happen before, it can be related to the version of t_coffee (I'm using 8.14). Basically t_coffee seems to be doing something weird with stderr and stdout, java doesn't like it and makes the process hang (as usual java has a lot of problems in this area, see StreamGobbler class). The way to solve it is use the -quiet switch of t_coffee that can be used to redirect output to a file or have a complete quiet terminal.
Revision
1009 -
Directory Listing
Modified
Wed Mar 31 15:50:04 2010 UTC
(10 years, 9 months ago)
by
hstehr
refactoring: moved many many classes to more appropriate packages; created new packages owl.core.sequence.alignment, owl.core.structure.alignment, owl.core.structure.features
Revision
1007 -
Directory Listing
Added
Wed Mar 31 13:27:18 2010 UTC
(10 years, 9 months ago)
by
hstehr
refactoring: moved casp, deltaRank, embed, graphAveraging, ppi, sadp to owl