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r1471
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features/ 1372 (8 years ago) by jmduarteg: MAJOR INTERFACE CHANGE: the main PDB data loading interface has changed. Now all loading of data occurs through PdbAsymUnit. Refactoring of some classes: Pdb is now PdbChain.
util/ 1431 (8 years ago) by jmduarteg: Changed behaviour of getId() in ChainInterfaceList, now uses the same ids as the interfaces, i.e. starts counting from 1 and not from 0. New graph classes for storing interface topology
connections/ 1462 (8 years ago) by jmduarteg: Fixed issues with mixed nucleic acid/protein entries and getAllInterfaces and calculation of ASAs in DNA
runners/ 1466 (8 years ago) by jmduarteg: Some improvements to PymolRunner, including reading color mappings from properties file
sequence/ 1467 (8 years ago) by jmduarteg: New method for getting URL of uniprot entry
structure/ 1471 (8 years ago) by jmduarteg: Introduced some more experimental code for enumeration of assemblies. BEWARE many things are UNFINISHED, namely in InterfaceGraph class the code to find induced and symmetry related interfaces is just a draft. There are many fundamental issues not solved yet. Be careful especially with implementations of equals and hashCode methods in InterfaceGraph, SubunitId, InterfaceGraphEdge etc. They alter "quietly" the behaviour of everything.
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