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r1476
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features/ 1372 (8 years ago) by jmduarteg: MAJOR INTERFACE CHANGE: the main PDB data loading interface has changed. Now all loading of data occurs through PdbAsymUnit. Refactoring of some classes: Pdb is now PdbChain.
util/ 1431 (8 years ago) by jmduarteg: Changed behaviour of getId() in ChainInterfaceList, now uses the same ids as the interfaces, i.e. starts counting from 1 and not from 0. New graph classes for storing interface topology
runners/ 1466 (8 years ago) by jmduarteg: Some improvements to PymolRunner, including reading color mappings from properties file
sequence/ 1467 (8 years ago) by jmduarteg: New method for getting URL of uniprot entry
connections/ 1472 (8 years ago) by jmduarteg: Fixed a couple of problems with ScopConnection. Added another atom type.
structure/ 1476 (8 years ago) by jmduarteg: Introduced alternative parsing mode for PDB files: if no SEQRES present now two modes of parsing possible, one where the sequence is padded with Xs based on numbering and one where sequence is taken as is in ATOM lines whatever the numbering
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