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root/owl/trunk/src/owl/core
r1325
File Last Change (rev)
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util/ 1325 (8 years ago) by jmduarteg: Now pdb file type guessing will guess correctly also with files starting with CRYST1 or SEQRES. PdbAsymUnit now works with pdb files like those 2 and also with ATOM line only ones
structure/ 1325 (8 years ago) by jmduarteg: Now pdb file type guessing will guess correctly also with files starting with CRYST1 or SEQRES. PdbAsymUnit now works with pdb files like those 2 and also with ATOM line only ones
connections/ 1324 (8 years ago) by jmduarteg: A few bug fixes and improvements in pdb data parsing. - bug fix: in some cases exptl method field has more than 1 value (e.g. 2krl). In cif files this was causing a null pointer. We now parse it properly (taking first one as the exptl method) in both cif and pdb files - improved very slightly the cif file parser moving out of loops the index getters - drop fullLength as a field in Pdb, now we have only getFullLength() - pdb file atom parsing is now column based and not regex based (hopefully will make it slightly faster) - now parsing the element column of pdb files: now the atom type detection comes from the appropriate field in pdb/cif/pdbase. If in pdb file and not present we still try to guess it as before
runners/ 1324 (8 years ago) by jmduarteg: A few bug fixes and improvements in pdb data parsing. - bug fix: in some cases exptl method field has more than 1 value (e.g. 2krl). In cif files this was causing a null pointer. We now parse it properly (taking first one as the exptl method) in both cif and pdb files - improved very slightly the cif file parser moving out of loops the index getters - drop fullLength as a field in Pdb, now we have only getFullLength() - pdb file atom parsing is now column based and not regex based (hopefully will make it slightly faster) - now parsing the element column of pdb files: now the atom type detection comes from the appropriate field in pdb/cif/pdbase. If in pdb file and not present we still try to guess it as before
sequence/ 1317 (9 years ago) by jmduarteg: Catching if the server returns non-requested records and throwin IOException for it.
features/ 1226 (9 years ago) by hstehr: Refactoring of SiftsConnection and SiftsFeature, now implementing Uniprot2Pdb
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