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root/owl/trunk/src/owl/core/connections
r1367
File Last Change
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pisa/ 1312 (9 years ago) by jmduarteg: Put back the parsing of score p values (was commented out)
package-info.java 1005 (10 years ago) by hstehr: refactoring: renaming proteinstructure to structure and tools to util; moving connections,features,runners,sequence,structure,util to owl.core
PrositeHit.java 1009 (10 years ago) by hstehr: refactoring: moved many many classes to more appropriate packages; created new packages owl.core.sequence.alignment, owl.core.structure.alignment, owl.core.structure.features
PrositeScanner.java 1009 (10 years ago) by hstehr: refactoring: moved many many classes to more appropriate packages; created new packages owl.core.sequence.alignment, owl.core.structure.alignment, owl.core.structure.features
NoMatchFoundException.java 1040 (10 years ago) by jmduarteg: New UniprotConnection taken from Henning's structural impact project (lots of new jar dependencies with that). New EmblWSDBFetchConnection class to get sequences from EMBL web services.
JPredStopNotifier.java 1060 (10 years ago) by hstehr: New helper classes JPredProgressRetriever and JPredNotifier which can be used to run JPredConnection in a thread and notify some GUI component of the progress.
JPredProgressRetriever.java 1060 (10 years ago) by hstehr: New helper classes JPredProgressRetriever and JPredNotifier which can be used to run JPredConnection in a thread and notify some GUI component of the progress.
JPredConnection.java 1062 (10 years ago) by stehr: fixed a minor bug in JPredConnection; new method SecondaryStructure.getConsensusSecondaryStructure(); changed visibility of RIGEnsemble.addFile() to public
SiftsConnection.java 1226 (10 years ago) by hstehr: Refactoring of SiftsConnection and SiftsFeature, now implementing Uniprot2Pdb
PhosphoSiteConnection.java 1231 (10 years ago) by hstehr: Adding class PhosphoSiteConnection
EmblWSDBfetchConnection.java 1326 (9 years ago) by jmduarteg: Renamed xxxxError classes to xxxxException as they should be.
GTGParser.java 1326 (9 years ago) by jmduarteg: Renamed xxxxError classes to xxxxException as they should be.
GTGHitList.java 1326 (9 years ago) by jmduarteg: Renamed xxxxError classes to xxxxException as they should be.
GTGHit.java 1326 (9 years ago) by jmduarteg: Renamed xxxxError classes to xxxxException as they should be.
ConsurfConnection.java 1341 (9 years ago) by jmduarteg: Now parsing pdb titles in PDB, CIF and pdbase. Tests pass. Moved some constants from Pdb to PdbAsymUnit
ScopConnection.java 1341 (9 years ago) by jmduarteg: Now parsing pdb titles in PDB, CIF and pdbase. Tests pass. Moved some constants from Pdb to PdbAsymUnit
ECConnection.java 1341 (9 years ago) by jmduarteg: Now parsing pdb titles in PDB, CIF and pdbase. Tests pass. Moved some constants from Pdb to PdbAsymUnit
CSAConnection.java 1341 (9 years ago) by jmduarteg: Now parsing pdb titles in PDB, CIF and pdbase. Tests pass. Moved some constants from Pdb to PdbAsymUnit
UniProtConnection.java 1347 (9 years ago) by hstehr: moving project CCCP to this repository
PDomainsConnection.java 1347 (9 years ago) by hstehr: moving project CCCP to this repository
UniProtPdbRef.java 1347 (9 years ago) by hstehr: moving project CCCP to this repository
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