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Revision 1347 - Directory Listing
Modified Mon Mar 21 10:38:06 2011 UTC (9 years, 7 months ago) by hstehr
moving project CCCP to this repository
Revision 1226 - Directory Listing
Modified Mon Sep 6 10:15:25 2010 UTC (10 years, 1 month ago) by hstehr
Refactoring of SiftsConnection and SiftsFeature, now implementing Uniprot2Pdb
Revision 1049 - Directory Listing
Modified Tue Apr 27 12:36:16 2010 UTC (10 years, 6 months ago) by hstehr
removing @Override annotations which were causing compilation errors for me
Revision 1042 - Directory Listing
Modified Wed Apr 21 16:11:08 2010 UTC (10 years, 6 months ago) by jmduarteg
New SiftsConnection and SiftsFeature classes for SIFTS pdb to uniprot mapping. Implemented the HasFeatures interface in Pdb. In the future we can hopefully use that mechanism for all features (sec. strucuture, scop and so on)
Revision 1036 - Directory Listing
Modified Mon Apr 19 14:27:11 2010 UTC (10 years, 6 months ago) by jmduarteg
Changed return type of addFeature to boolean to match the java Collection interface
Revision 1009 - Directory Listing
Modified Wed Mar 31 15:50:04 2010 UTC (10 years, 6 months ago) by hstehr
refactoring: moved many many classes to more appropriate packages; created new packages owl.core.sequence.alignment, owl.core.structure.alignment, owl.core.structure.features
Revision 1005 - Directory Listing
Modified Wed Mar 31 12:29:26 2010 UTC (10 years, 6 months ago) by hstehr
Copied from: trunk/src/features revision 1002
refactoring: renaming proteinstructure to structure and tools to util; moving connections,features,runners,sequence,structure,util to owl.core
Revision 998 - Directory Listing
Modified Mon Mar 29 10:04:04 2010 UTC (10 years, 7 months ago) by jmduarteg
Original Path: trunk/src/features
Minor refactoring and comment fixes
Revision 981 - Directory Listing
Modified Tue Mar 16 12:53:13 2010 UTC (10 years, 7 months ago) by hstehr
Original Path: trunk/src/features
Introducing new StructuralDomainFeature for structural domains as defined by SCOP, CATH, DomainParser etc.
Revision 958 - Directory Listing
Modified Fri Feb 12 15:22:36 2010 UTC (10 years, 8 months ago) by duarte
Original Path: trunk/src/features
Moved Interval* and IntPair* classes to tools package
Revision 951 - Directory Listing
Modified Fri Jan 29 16:12:34 2010 UTC (10 years, 8 months ago) by duarte
Original Path: trunk/src/features
Copied from: trunk/features revision 949
Reorganised the project with a src folder for java source files.
Added a jars dir with all jars needed for the project.
Added .project and .classpath pointing to relative path of jars. 
The project should now work out of the box after a check-out with eclipse. No need to setup external jars or anything.
Revision 938 - Directory Listing
Modified Tue Jan 5 15:47:39 2010 UTC (10 years, 9 months ago) by stehr
Original Path: trunk/features
fixed bugs in getDescription()
Revision 915 - Directory Listing
Modified Tue Oct 20 12:38:56 2009 UTC (11 years ago) by stehr
Original Path: trunk/features
fixed an interesting bug where a recursive function call would lead to a stack overflow exception
Revision 908 - Directory Listing
Modified Wed Sep 30 13:23:13 2009 UTC (11 years ago) by stehr
Original Path: trunk/features
new feature type PhosphoSitePlusFeature (for post-translational modifications)
Revision 879 - Directory Listing
Modified Fri Aug 7 13:45:06 2009 UTC (11 years, 2 months ago) by stehr
Original Path: trunk/features
moving all classes in proteinstructure.features to features
Revision 878 - Directory Listing
Added Fri Aug 7 13:41:45 2009 UTC (11 years, 2 months ago) by stehr
Original Path: trunk/features
preparing to move package 'proteinstructure.features' to 'features'