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root/owl/trunk/src/owl/core/runners
r1367
File Last Change
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gromacs/ 1009 (10 years ago) by hstehr: refactoring: moved many many classes to more appropriate packages; created new packages owl.core.sequence.alignment, owl.core.structure.alignment, owl.core.structure.features
blast/ 1335 (9 years ago) by jmduarteg: Now throwing InterruptedException. Refactor BlastErro to BlastException
tinker/ 1341 (9 years ago) by jmduarteg: Now parsing pdb titles in PDB, CIF and pdbase. Tests pass. Moved some constants from Pdb to PdbAsymUnit
CalcSurfVolRunner.java 1032 (10 years ago) by jmduarteg: Extracted the calc-vol and calc-surf runner code to its own Runner class.
DsspRunner.java 1046 (10 years ago) by hstehr: JPredConnection now returns a SecondaryStructure object; some updated javadocs
NaccessRunner.java 1242 (10 years ago) by jmduarteg: Fixed bug: NACCESS (weirdly) calculates slightly different ASA values for same molecule in different orientation (i.e. it depends on the choice of axes)!! That produces then some strange BSA values (including some negative) and slight discrepancies. Thus now we run NACCESS always for each of the 2 isolated molecules of the interface and then the complex (and so losing efficiency).
DaliRunner.java 1326 (9 years ago) by jmduarteg: Renamed xxxxError classes to xxxxException as they should be.
PsipredException.java 1334 (9 years ago) by jmduarteg: Refactoring xxxError to xxxException
TcoffeeException.java 1334 (9 years ago) by jmduarteg: Refactoring xxxError to xxxException
SelectonRunner.java 1335 (9 years ago) by jmduarteg: Now throwing InterruptedException. Refactor BlastErro to BlastException
TcoffeeRunner.java 1335 (9 years ago) by jmduarteg: Now throwing InterruptedException. Refactor BlastErro to BlastException
PsipredRunner.java 1335 (9 years ago) by jmduarteg: Now throwing InterruptedException. Refactor BlastErro to BlastException
PymolRunner.java 1345 (9 years ago) by jmduarteg: Now the colors of chains of pymol generated images are consistent with the letter codes (given a chain letter code the color will always be the same for it for all images generated)
MaxClusterRunner.java 1347 (9 years ago) by hstehr: moving project CCCP to this repository
PolyposeRunner.java 1355 (9 years ago) by hstehr: Fixed some conflicts when running multiple instances of this on the same machine
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