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root/owl/trunk/src/owl/core/runners
r1226
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tinker/ 1127 (10 years ago) by matt4077: New Residuescoringfunctionimplementation
gromacs/ 1009 (11 years ago) by hstehr: refactoring: moved many many classes to more appropriate packages; created new packages owl.core.sequence.alignment, owl.core.structure.alignment, owl.core.structure.features
blast/ 1106 (10 years ago) by jmduarteg: Implemented caching of blast in UniprotHomologList
TcoffeeRunner.java 1097 (10 years ago) by jmduarteg: Now explicitely specifying output dnd file in tcoffee so it can be removed by the calling program.
TcoffeeError.java 1009 (11 years ago) by hstehr: refactoring: moved many many classes to more appropriate packages; created new packages owl.core.sequence.alignment, owl.core.structure.alignment, owl.core.structure.features
SelectonRunner.java 1132 (10 years ago) by jmduarteg: New SelectonRunner class. More taxonomy information retrieved from uniprot.
PsipredRunner.java 1046 (11 years ago) by hstehr: JPredConnection now returns a SecondaryStructure object; some updated javadocs
PsipredError.java 1009 (11 years ago) by hstehr: refactoring: moved many many classes to more appropriate packages; created new packages owl.core.sequence.alignment, owl.core.structure.alignment, owl.core.structure.features
PolyposeRunner.java 1009 (11 years ago) by hstehr: refactoring: moved many many classes to more appropriate packages; created new packages owl.core.sequence.alignment, owl.core.structure.alignment, owl.core.structure.features
NaccessRunner.java 1211 (10 years ago) by jmduarteg: First implementation of enumeration of interfaces (based on crystal transformations), equivalent to PISA's. This is still a very rough implementation (far too slow) and not totally correct: some of the interfaces are duplicated. Needs more work but still good as a starting point.
MaxClusterRunner.java 1199 (10 years ago) by hstehr: added some debug output (commented out)
DsspRunner.java 1046 (11 years ago) by hstehr: JPredConnection now returns a SecondaryStructure object; some updated javadocs
DaliRunner.java 1009 (11 years ago) by hstehr: refactoring: moved many many classes to more appropriate packages; created new packages owl.core.sequence.alignment, owl.core.structure.alignment, owl.core.structure.features
CalcSurfVolRunner.java 1032 (11 years ago) by jmduarteg: Extracted the calc-vol and calc-surf runner code to its own Runner class.
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