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root/owl/trunk/src/owl/core/sequence
r1367
File Last Change
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alignment/ 1340 (9 years ago) by hstehr: Fixed bugs in method for reading from PIR file; added script to convert from PIR to Fasta
geneticCode.dat 1114 (10 years ago) by jmduarteg: New feature: code for dna to protein translation
ReadingFrame.java 1114 (10 years ago) by jmduarteg: New feature: code for dna to protein translation
TranslationException.java 1119 (10 years ago) by jmduarteg: Now checking also for ambiguous nucleotide codes (n, m) when translating. Changed implementation of translation by using the new Codon class.
Translator.java 1119 (10 years ago) by jmduarteg: Now checking also for ambiguous nucleotide codes (n, m) when translating. Changed implementation of translation by using the new Codon class.
GeneticCodeType.java 1132 (10 years ago) by jmduarteg: New SelectonRunner class. More taxonomy information retrieved from uniprot.
Codon.java 1154 (10 years ago) by jmduarteg: And all other amiguous codons
UniprotVerMisMatchException.java 1259 (10 years ago) by jmduarteg: New exception for mismatching uniprot versions
UniprotEntry.java 1306 (9 years ago) by jmduarteg: Added Serializable interface to many classes. To be able to serialize classes containing objects of these types.
ProteinToCDSMatch.java 1306 (9 years ago) by jmduarteg: Added Serializable interface to many classes. To be able to serialize classes containing objects of these types.
UniprotHomolog.java 1306 (9 years ago) by jmduarteg: Added Serializable interface to many classes. To be able to serialize classes containing objects of these types.
TranslatedFrame.java 1306 (9 years ago) by jmduarteg: Added Serializable interface to many classes. To be able to serialize classes containing objects of these types.
UniprotHomologList.java 1335 (9 years ago) by jmduarteg: Now throwing InterruptedException. Refactor BlastErro to BlastException
Sequence.java 1346 (9 years ago) by jmduarteg: Now detecting type of sequence: protein/nucleotide
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