Revision 1012 - (view) (annotate) - [select for diffs]
Modified Thu Apr 1 08:41:01 2010 UTC (10 years, 9 months ago) by hstehr
File length: 3729 byte(s)
Diff to previous 1005

bugfix: hard-coded paths to files aapairsBounds.dat and contactTypes.dat had to be updated following the refactoring (this was already fixed by previous commit); introduced proper error messags if files are not found

Revision 1005 - (view) (annotate) - [select for diffs]
Modified Wed Mar 31 12:29:26 2010 UTC (10 years, 9 months ago) by hstehr
File length: 3362 byte(s)
Copied from: trunk/src/proteinstructure/aapairsBounds.dat revision 1002
Diff to previous 951

refactoring: renaming proteinstructure to structure and tools to util; moving connections,features,runners,sequence,structure,util to owl.core

Revision 951 - (view) (annotate) - [select for diffs]
Modified Fri Jan 29 16:12:34 2010 UTC (10 years, 11 months ago) by duarte
Original Path: trunk/src/proteinstructure/aapairsBounds.dat
File length: 3362 byte(s)
Diff to previous 492

Reorganised the project with a src folder for java source files.
Added a jars dir with all jars needed for the project.
Added .project and .classpath pointing to relative path of jars. 
The project should now work out of the box after a check-out with eclipse. No need to setup external jars or anything.

Revision 492 - (view) (annotate) - [select for diffs]
Modified Wed Jan 2 13:18:57 2008 UTC (13 years ago) by duarte
Original Path: trunk/proteinstructure/aapairsBounds.dat
File length: 3362 byte(s)
Diff to previous 419

Copied the aglappe-jung branch into trunk.

Revision 419 - (view) (annotate) - [select for diffs]
Modified Thu Nov 22 14:09:18 2007 UTC (13 years, 2 months ago) by duarte
Original Path: branches/aglappe-jung/proteinstructure/aapairsBounds.dat
File length: 3362 byte(s)
Diff to previous 335

Re-branching for JUNG2 development

Revision 335 - (view) (annotate) - [select for diffs]
Added Tue Oct 2 14:59:28 2007 UTC (13 years, 3 months ago) by duarte
Original Path: trunk/proteinstructure/aapairsBounds.dat
File length: 3362 byte(s)

Now ConstraintsMaker works also for multi atom contact types (BB and SC) and crosses (either BB/SC or any cross to a single atom contact type)
New file aapairsBounds.dat with values for aminoacid side chains distance lower and upper bounds taken from statistics of a set of pdb representatives
New in AAinfo: aapairs2bounds and changed getUpperBoundDistance, getUpperBoundDistance to accomodate aapairs2bounds
PRMInfo: now for amber "OXT" gets transformed into "O"