Revision 1326 - Directory Listing
Modified Thu Mar 3 13:21:18 2011 UTC (9 years, 11 months ago) by jmduarteg

Renamed xxxxError classes to xxxxException as they should be.

Revision 1316 - Directory Listing
Modified Wed Feb 9 15:55:49 2011 UTC (10 years ago) by jmduarteg

Got rid (finally!) of AAinfo. Its functionality is now in ContactType and AminoAcid.

Revision 1314 - Directory Listing
Modified Wed Feb 9 11:36:04 2011 UTC (10 years ago) by jmduarteg

Finally got rid of all duplicated amino acid methods in AAinfo. Now everything unified in AminoAcid enum.

Revision 1305 - Directory Listing
Modified Fri Jan 21 10:11:16 2011 UTC (10 years, 1 month ago) by jmduarteg

Renaming all xxxxError named exceptions to xxxxException. Long overdue thing (was historical because it came from python). Learnt just recently that java does have a concept of Error too.

Revision 1245 - Directory Listing
Modified Thu Sep 30 10:44:38 2010 UTC (10 years, 5 months ago) by gmueller

does most of the job SparseMatrix did before

Revision 1243 - Directory Listing
Modified Thu Sep 30 08:34:46 2010 UTC (10 years, 5 months ago) by gmueller

some methods removed and added to a new class, other simplified

Revision 1240 - Directory Listing
Modified Tue Sep 21 12:12:07 2010 UTC (10 years, 5 months ago) by hstehr

suppressing two warnings

Revision 1239 - Directory Listing
Modified Tue Sep 21 12:01:35 2010 UTC (10 years, 5 months ago) by gmueller

sparse matrix exception

Revision 1227 - Directory Listing
Modified Tue Sep 7 09:47:02 2010 UTC (10 years, 5 months ago) by gmueller

new methods added
-method, takes care of row and column index maps (refreshMatrix())
-methods, adding or removing entries, without refreshing index mapping
-norm methods(norm1(), norm2(), normInf()) as well as a special innerProduct() method

Revision 1220 - Directory Listing
Modified Wed Sep 1 14:20:44 2010 UTC (10 years, 5 months ago) by hstehr

deleting two classes which were making problems

Revision 1202 - Directory Listing
Modified Thu Aug 19 10:21:08 2010 UTC (10 years, 6 months ago) by hstehr

suppress "method not used" warning

Revision 1018 - Directory Listing
Modified Fri Apr 9 10:40:29 2010 UTC (10 years, 10 months ago) by hstehr

removing a warning in owl.embed.contactmaps.Demes

Revision 1016 - Directory Listing
Modified Fri Apr 9 09:18:35 2010 UTC (10 years, 10 months ago) by jmduarteg

Added a supresswarnings tag (it's simply unused code)

Revision 1015 - Directory Listing
Modified Fri Apr 9 09:16:04 2010 UTC (10 years, 10 months ago) by jmduarteg

Fixed import (was a compile error)

Revision 1014 - Directory Listing
Modified Thu Apr 8 16:34:26 2010 UTC (10 years, 10 months ago) by gmueller

cone peeling algorithm as implemented in sathyas classes, does not contain any public constructors, must use public statics

Revision 1009 - Directory Listing
Modified Wed Mar 31 15:50:04 2010 UTC (10 years, 11 months ago) by hstehr

refactoring: moved many many classes to more appropriate packages; created new packages owl.core.sequence.alignment, owl.core.structure.alignment, owl.core.structure.features

Revision 1007 - Directory Listing
Added Wed Mar 31 13:27:18 2010 UTC (10 years, 11 months ago) by hstehr

refactoring: moved casp, deltaRank, embed, graphAveraging, ppi, sadp to owl