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Revision 919 - Directory Listing
Modified Tue Oct 20 16:55:17 2009 UTC (9 years, 11 months ago) by duarte
Fixed bug: was not handling correctly sequences with 'X' in reconstruction
Fixed bug: Pdb.getPhi/Psi were failing because hasCoordinates(int,String) was NullPointing for unobserved residues. 
Added test case for getAllPhiPsi
Revision 885 - Directory Listing
Modified Fri Aug 14 10:37:31 2009 UTC (10 years, 2 months ago) by duarte
Major change: now hydrogens are read in Pdb and subclasses
New getChirality method in Residue.
Added some more unit tests.
Revision 884 - Directory Listing
Modified Tue Aug 11 16:01:00 2009 UTC (10 years, 2 months ago) by duarte
Major commit: 
- change of the implementation of Pdb (interface remains backwards compatible). Now data stored in a proper object-oriented way. Pdb not abstract anymore, a protein model can be created by using one of the constructors
- added many tests and test files for Pdb (and merged some already existing tests from the default package)
- removed obsolete classes related to msd
- bug fix: PdbfilePdb now properly reads files with alt codes
- all tests passed
Revision 864 - Directory Listing
Modified Tue Jul 21 10:44:34 2009 UTC (10 years, 2 months ago) by duarte
Extracted constants. Written a basic test for consurf parsing.
Revision 863 - Directory Listing
Modified Mon Jul 20 10:21:59 2009 UTC (10 years, 2 months ago) by duarte
New check in PdbfilePdb parser. New test for pdb file parsing in PdbParsersTest.
Revision 813 - Directory Listing
Modified Tue Dec 16 11:11:39 2008 UTC (10 years, 9 months ago) by duarte
Fixed runNaccess to use unique file names and documented it. Wrote also a junit test case for it.
Revision 788 - Directory Listing
Modified Mon Nov 3 15:13:59 2008 UTC (10 years, 11 months ago) by filippis
white TO talyn
Revision 762 - Directory Listing
Modified Thu Sep 25 13:44:21 2008 UTC (11 years ago) by duarte
Added length sanity check tests
Revision 750 - Directory Listing
Modified Tue Sep 16 13:15:25 2008 UTC (11 years ago) by duarte
Now we can run blast with multi threads option
Revision 743 - Directory Listing
Added Thu Sep 11 10:06:22 2008 UTC (11 years, 1 month ago) by duarte
New tests package (should be a folder and under it packages, but for now we can't do that until we move all source code to a src folder).
Moved all existing tests to appropiate tests packages.
New test PdbParsersTest: does cif against pdbase at the moment.
Adde equals method to SecStrucElement
Added some getters to Pdb