Revision 884 - Directory Listing
Modified Tue Aug 11 16:01:00 2009 UTC (11 years, 5 months ago) by duarte

Major commit: 
- change of the implementation of Pdb (interface remains backwards compatible). Now data stored in a proper object-oriented way. Pdb not abstract anymore, a protein model can be created by using one of the constructors
- added many tests and test files for Pdb (and merged some already existing tests from the default package)
- removed obsolete classes related to msd
- bug fix: PdbfilePdb now properly reads files with alt codes
- all tests passed

Revision 864 - Directory Listing
Modified Tue Jul 21 10:44:34 2009 UTC (11 years, 6 months ago) by duarte

Extracted constants. Written a basic test for consurf parsing.

Revision 863 - Directory Listing
Modified Mon Jul 20 10:21:59 2009 UTC (11 years, 6 months ago) by duarte

New check in PdbfilePdb parser. New test for pdb file parsing in PdbParsersTest.

Revision 813 - Directory Listing
Modified Tue Dec 16 11:11:39 2008 UTC (12 years, 1 month ago) by duarte

Fixed runNaccess to use unique file names and documented it. Wrote also a junit test case for it.

Revision 788 - Directory Listing
Modified Mon Nov 3 15:13:59 2008 UTC (12 years, 2 months ago) by filippis

white TO talyn

Revision 743 - Directory Listing
Added Thu Sep 11 10:06:22 2008 UTC (12 years, 4 months ago) by duarte

New tests package (should be a folder and under it packages, but for now we can't do that until we move all source code to a src folder).
Moved all existing tests to appropiate tests packages.
New test PdbParsersTest: does cif against pdbase at the moment.
Adde equals method to SecStrucElement
Added some getters to Pdb