Revision
884 -
Directory Listing
Modified
Tue Aug 11 16:01:00 2009 UTC
(11 years, 5 months ago)
by
duarte
Major commit:
- change of the implementation of Pdb (interface remains backwards compatible). Now data stored in a proper object-oriented way. Pdb not abstract anymore, a protein model can be created by using one of the constructors
- added many tests and test files for Pdb (and merged some already existing tests from the default package)
- removed obsolete classes related to msd
- bug fix: PdbfilePdb now properly reads files with alt codes
- all tests passed
Revision
864 -
Directory Listing
Modified
Tue Jul 21 10:44:34 2009 UTC
(11 years, 6 months ago)
by
duarte
Extracted constants. Written a basic test for consurf parsing.
Revision
863 -
Directory Listing
Modified
Mon Jul 20 10:21:59 2009 UTC
(11 years, 6 months ago)
by
duarte
New check in PdbfilePdb parser. New test for pdb file parsing in PdbParsersTest.
Revision
813 -
Directory Listing
Modified
Tue Dec 16 11:11:39 2008 UTC
(12 years, 1 month ago)
by
duarte
Fixed runNaccess to use unique file names and documented it. Wrote also a junit test case for it.
Revision
788 -
Directory Listing
Modified
Mon Nov 3 15:13:59 2008 UTC
(12 years, 2 months ago)
by
filippis
white TO talyn
Revision
743 -
Directory Listing
Added
Thu Sep 11 10:06:22 2008 UTC
(12 years, 4 months ago)
by
duarte
New tests package (should be a folder and under it packages, but for now we can't do that until we move all source code to a src folder).
Moved all existing tests to appropiate tests packages.
New test PdbParsersTest: does cif against pdbase at the moment.
Adde equals method to SecStrucElement
Added some getters to Pdb