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r87
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R.java 14 (13 years ago) by stehr: removed ununsed imports and variables
mySQLConnect.java 14 (13 years ago) by stehr: removed ununsed imports and variables
calcMST.java 14 (13 years ago) by stehr: removed ununsed imports and variables
Report.java 14 (13 years ago) by stehr: removed ununsed imports and variables
MultiOutputStream.java 27 (13 years ago) by stehr: initial import
MultiOutputStreamTest.java 27 (13 years ago) by stehr: initial import
PymolServerOutputStream.java 28 (13 years ago) by stehr: prevent overlong commands from being sent to the server
PymolServerOutputStreamTest.java 29 (13 years ago) by stehr: changed server port to standard
utils4lh.java 30 (13 years ago) by stehr: introduced generics, so class will compile in Java 5, not sure though whether the functionality is the same as before, will need more testing
SystemCmd.java 39 (13 years ago) by filippis: Adding comments
Msdsd2Pdb.java 40 (13 years ago) by filippis: Adding Msdsd2Pdb and PyMol classes
Machine.java 45 (13 years ago) by filippis: Graph2Pymol class now functional testGraph2Pymol class now functional with comments also PyMol class:python strings methods and removeList, concatList, refresh methods added Machine class: indentation
PyMol.java 48 (13 years ago) by filippis: Refresh method added plus refresh added before saving image
Graph2Pml.java 49 (13 years ago) by filippis: More flexibility in coloring, popDefaults/setDefaults methods plus comments
ColoredStrings.java 54 (13 years ago) by stehr: initial import
ColoredStringsTest.java 54 (13 years ago) by stehr: initial import
utils4DB.java 56 (13 years ago) by filippis: execUpdateQuery method added and code in comments was removed
ClusterConnection.java 81 (13 years ago) by duarte: Changed the Connection fields to be MySQLConnection. Thanks to this, simplify considerably a lot of the methods by using the MySQLConnection methods. Got rid of method loadSQLDriver and URL final field
MySQLConnection.java 84 (13 years ago) by duarte: Fixed bug in getTables4Db. Was closing the connection. Shouldn't do this! Add method getAllIds4KeyAndTables, moved from DataDistribution. It makes more sense to have it here.
DataDistribution.java 85 (13 years ago) by duarte: MAJOR change. Split DataDistribution into 2 classes: DataDistributer and DataDistribution. I haven't actually changed or added functionality DataDistributer deals with the distribution of the data, while DataDistribution deals with things to do when data is already distributed, right now is only a few data checks Note that DataDistributer now has two db fields: srcDb and destDb. This is different to before, when destDb was rather a parameter passed as arguments to the methods Methods in DataDistributer have been tidied up a little (specially load and dump ones)
QueryThread.java 86 (13 years ago) by duarte: Added PARALLELISM in load/dump of tables using new class QueryThread (extends Thread) Modified methods loadData, dumpData and loadSplitData to dump/load parallely in cases that is useful by using the QueryThread class. New method initializeDirs(String[]) to do some of the dir initialization that was in dumpData Got rid of one of the getConnectionToNode method, not needed anymore New important 2 final static variables: NUM_CONCURRENT_READ_QUERIES and NUM_CONCURRENT_WRITE_QUERIES. They define how much concurrency we want in reads/writes to nfs for loads/dumps
DataDistributer.java 87 (13 years ago) by duarte: Improved considerably the splitTableToCluster method: - got rid of the unnecessary step of creating partial tables before dumping. - now directly dumping with new method dumpSplitData, a modified dumpData that dumps using a WHERE condition - added variable NUM_CONCURRENT_SAMEHOST_WRITE_QUERIES used in dumpSplitData method. It sets the concurrency when dumping locally only from the master
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