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Author: duarte
Date: Wed Jan 2 13:18:57 2008 UTC (11 years, 8 months ago)
Log Message:
Copied the aglappe-jung branch into trunk.

Changed paths

Path Details
Directorytrunk/Manifest.txt
(Copied from branches/aglappe-jung/Manifest.txt, r491)
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Directorytrunk/actionTools/
(Copied from branches/aglappe-jung/actionTools, r491)
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Directorytrunk/benchmarkGraphAlgorithm.java
(Copied from branches/aglappe-jung/benchmarkGraphAlgorithm.java, r491)
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Directorytrunk/calculateGridDensity.java
(Copied from branches/aglappe-jung/calculateGridDensity.java, r491)
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Directorytrunk/cnCoarseNbhood.java
(Copied from branches/aglappe-jung/cnCoarseNbhood.java, r491)
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Directorytrunk/cnEvalTargetNbhood.java
(Copied from branches/aglappe-jung/cnEvalTargetNbhood.java, r491)
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Directorytrunk/cnHashIterNbhood.java
(Copied from branches/aglappe-jung/cnHashIterNbhood.java, r491)
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Directorytrunk/cnex1.java
(Copied from branches/aglappe-jung/cnex1.java, r491)
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Directorytrunk/compareCMs.java
(Copied from branches/aglappe-jung/compareCMs.java, r491)
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Directorytrunk/createGraphDb.sh
(Copied from branches/aglappe-jung/createGraphDb.sh, r491)
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Directorytrunk/dumpseq.java
(Copied from branches/aglappe-jung/dumpseq.java, r491)
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Directorytrunk/genDbGraph.java
(Copied from branches/aglappe-jung/genDbGraph.java, r491)
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Directorytrunk/genGraph.java
(Copied from branches/aglappe-jung/genGraph.java, r491)
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Directorytrunk/graphAveraging/
(Copied from branches/aglappe-jung/graphAveraging, r491)
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Directorytrunk/hashIterNbhood.java
(Copied from branches/aglappe-jung/hashIterNbhood.java, r491)
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Directorytrunk/iterEvalNbhood.java
(Copied from branches/aglappe-jung/iterEvalNbhood.java, r491)
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Directorytrunk/iterateNbhood.java
(Copied from branches/aglappe-jung/iterateNbhood.java, r491)
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Directorytrunk/iterateNbs.java
(Copied from branches/aglappe-jung/iterateNbs.java, r491)
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Directorytrunk/iterateUpperNbhood.java
(Copied from branches/aglappe-jung/iterateUpperNbhood.java, r491)
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Directorytrunk/iterateUpperNbs.java
(Copied from branches/aglappe-jung/iterateUpperNbs.java, r491)
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Directorytrunk/listInfoGain.java
(Copied from branches/aglappe-jung/listInfoGain.java, r491)
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Directorytrunk/listInfoLoss.java
(Copied from branches/aglappe-jung/listInfoLoss.java, r491)
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Directorytrunk/makeNbhTbl.java
(Copied from branches/aglappe-jung/makeNbhTbl.java, r491)
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Directorytrunk/maxInfoGain.java
(Copied from branches/aglappe-jung/maxInfoGain.java, r491)
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Directorytrunk/minInfoGain.java
(Copied from branches/aglappe-jung/minInfoGain.java, r491)
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Directorytrunk/proteinstructure/
(Copied from branches/aglappe-jung/proteinstructure, r491)
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Directorytrunk/reconstruct.java
(Copied from branches/aglappe-jung/reconstruct.java, r491)
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Directorytrunk/rewriteNBHood.java
(Copied from branches/aglappe-jung/rewriteNBHood.java, r491)
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Directorytrunk/rewriteNBHood_parallel.java
(Copied from branches/aglappe-jung/rewriteNBHood_parallel.java, r491)
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Directorytrunk/sadp/
(Copied from branches/aglappe-jung/sadp, r491)
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Directorytrunk/scoreTargetMoves.java
(Copied from branches/aglappe-jung/scoreTargetMoves.java, r491)
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Directorytrunk/testClusterConnection.java
(Copied from branches/aglappe-jung/testClusterConnection.java, r491)
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Directorytrunk/testDeltaDistanceMap.java
(Copied from branches/aglappe-jung/testDeltaDistanceMap.java, r491)
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Directorytrunk/testGetChains.java
(Copied from branches/aglappe-jung/testGetChains.java, r491)
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Directorytrunk/testGraph2Pml.java
(Copied from branches/aglappe-jung/testGraph2Pml.java, r491)
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Directorytrunk/testGraphAverager.java
(Copied from branches/aglappe-jung/testGraphAverager.java, r491)
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Directorytrunk/testJUNGframework.java
(Copied from branches/aglappe-jung/testJUNGframework.java, r491)
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Directorytrunk/testMySQLConnection.java
(Copied from branches/aglappe-jung/testMySQLConnection.java, r491)
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Directorytrunk/testPdb.java
(Copied from branches/aglappe-jung/testPdb.java, r491)
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Directorytrunk/testPyMol.java
(Copied from branches/aglappe-jung/testPyMol.java, r491)
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Directorytrunk/testPymolServer.java
(Copied from branches/aglappe-jung/testPymolServer.java, r491)
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Directorytrunk/testResidueSelectionString.java
(Copied from branches/aglappe-jung/testResidueSelectionString.java, r491)
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Directorytrunk/tinker/
(Copied from branches/aglappe-jung/tinker, r491)
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Directorytrunk/tools/
(Copied from branches/aglappe-jung/tools, r491)
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Directorytrunk/writeTargetMoves.java
(Copied from branches/aglappe-jung/writeTargetMoves.java, r491)
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