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Author: duarte
Date: Wed Feb 13 17:44:40 2008 UTC (11 years, 9 months ago)
Log Message:
Fixed GraphAverager: wasn't working since we introduced JUNG. 
Also added some better output in checkSequences() when sequence don't match between alignment/graphs. Now we take the 2 sequences calculate a pairwise alignment (using jaligner) and output it. This is useful for picking up unobserves and similars.

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