[ViewVC] Revision 1006 of: owl

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Author:	hstehr
Date:	Wed Mar 31 13:00:35 2010 UTC (10 years, 3 months ago)
Log Message:	refactoring: created packages runners.blast, runners.gromacs, structure.graphs, moved actionTools to util, structure.decoyScoring to owl.decoyScoring, tinker to runners.tinker

Changed paths

Path	Details
trunk/src/actionTools/	deleted
trunk/src/averageGraph.java	modified , text changed
trunk/src/casp/pipeline/RunAll.java	modified , text changed
trunk/src/computeEnergies.java	modified , text changed
trunk/src/owl/core/runners/blast/	added
trunk/src/owl/core/runners/gromacs/	added
trunk/src/owl/core/runners/tinker/ (Copied from trunk/src/tinker, r1002)	added
trunk/src/owl/core/runners/tinker/ConstraintsMaker.java (Copied from trunk/src/tinker/ConstraintsMaker.java, r1005)	replaced , text changed
trunk/src/owl/core/runners/tinker/GromacsError.java	modified , text changed
trunk/src/owl/core/runners/tinker/GromacsMDP.java	modified , text changed
trunk/src/owl/core/runners/tinker/GromacsRunner.java	modified , text changed
trunk/src/owl/core/runners/tinker/PRMInfo.java (Copied from trunk/src/tinker/PRMInfo.java, r1005)	replaced , text changed
trunk/src/owl/core/runners/tinker/TinkerError.java	modified , text changed
trunk/src/owl/core/runners/tinker/TinkerRunner.java (Copied from trunk/src/tinker/TinkerRunner.java, r1005)	replaced , text changed
trunk/src/owl/core/structure/decoyScoring/	deleted
trunk/src/owl/core/structure/graphs/	added
trunk/src/owl/core/util/actionTools/ (Copied from trunk/src/actionTools, r1002)	added
trunk/src/owl/core/util/actionTools/Action.java	modified , text changed
trunk/src/owl/core/util/actionTools/Checker.java	modified , text changed
trunk/src/owl/core/util/actionTools/Doer.java	modified , text changed
trunk/src/owl/core/util/actionTools/Getter.java	modified , text changed
trunk/src/owl/core/util/actionTools/GetterError.java	modified , text changed
trunk/src/owl/core/util/actionTools/Retriever.java	modified , text changed
trunk/src/owl/core/util/actionTools/Runner.java	modified , text changed
trunk/src/owl/core/util/actionTools/TinkerStatusNotifier.java	modified , text changed
trunk/src/owl/core/util/actionTools/package-info.java	modified , text changed
trunk/src/owl/decoyScoring/ (Copied from trunk/src/owl/core/structure/decoyScoring, r1005)	added
trunk/src/owl/decoyScoring/AtomCombinedScorer.java	modified , text changed
trunk/src/owl/decoyScoring/AtomCountScorer.java	modified , text changed
trunk/src/owl/decoyScoring/AtomTripletScorer.java	modified , text changed
trunk/src/owl/decoyScoring/AtomTypeScorer.java	modified , text changed
trunk/src/owl/decoyScoring/CountScorer.java	modified , text changed
trunk/src/owl/decoyScoring/DecoyScore.java	modified , text changed
trunk/src/owl/decoyScoring/DecoyScoreSet.java	modified , text changed
trunk/src/owl/decoyScoring/DecoyScoreSetsGroup.java	modified , text changed
trunk/src/owl/decoyScoring/DistanceScorer.java	modified , text changed
trunk/src/owl/decoyScoring/GenerateSummaries.java	modified , text changed
trunk/src/owl/decoyScoring/ResCombinedScorer.java	modified , text changed
trunk/src/owl/decoyScoring/ResCountScorer.java	modified , text changed
trunk/src/owl/decoyScoring/ResTripletScorer.java	modified , text changed
trunk/src/owl/decoyScoring/ResTypeScorer.java	modified , text changed
trunk/src/owl/decoyScoring/Scorer.java	modified , text changed
trunk/src/owl/decoyScoring/ScoringMethod.java	modified , text changed
trunk/src/owl/decoyScoring/TripletScorer.java	modified , text changed
trunk/src/owl/decoyScoring/TypeScorer.java	modified , text changed
trunk/src/reconstruct.java	modified , text changed
trunk/src/runMD.java	modified , text changed
trunk/src/sadp/SADP.java	modified , text changed
trunk/src/scoreDecoys.java	modified , text changed
trunk/src/scorePdbSet.java	modified , text changed
trunk/src/tests/tinker/TinkerRunnerTest.java	modified , text changed
trunk/src/tinker/	deleted