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Author: jmduarteg
Date: Fri Oct 4 08:43:49 2013 UTC (5 years, 10 months ago)
Log Message:
Moved to core.structure.io the classes that belong there (except for the parsers themselves, we can't move them yet because there are some protected methods needed in core.structure). Removed some warnings from other files.

Changed paths

Path Details
Directorytrunk/src/averageGraph.java modified , text changed
Directorytrunk/src/computeEnergies.java modified , text changed
Directorytrunk/src/dumpseq.java modified , text changed
Directorytrunk/src/owl/core/structure/AtomLine.java deleted
Directorytrunk/src/owl/core/structure/AtomLineList.java deleted
Directorytrunk/src/owl/core/structure/CiffileParser.java
(Copied from trunk/src/owl/core/structure/CiffileParser.java, r1677)
replaced , text changed
Directorytrunk/src/owl/core/structure/PdbaseParser.java
(Copied from trunk/src/owl/core/structure/PdbaseParser.java, r1677)
replaced , text changed
Directorytrunk/src/owl/core/structure/PdbfileParser.java
(Copied from trunk/src/owl/core/structure/PdbfileParser.java, r1677)
replaced , text changed
Directorytrunk/src/owl/core/structure/PdbxPolySeqGroup.java deleted
Directorytrunk/src/owl/core/structure/PdbxPolySeqLine.java deleted
Directorytrunk/src/owl/core/structure/PdbxPolySeqLineList.java deleted
Directorytrunk/src/owl/core/structure/SecStructureLine.java deleted
Directorytrunk/src/owl/core/structure/io/AtomLine.java
(Copied from trunk/src/owl/core/structure/AtomLine.java, r1677)
added , text changed
Directorytrunk/src/owl/core/structure/io/AtomLineList.java
(Copied from trunk/src/owl/core/structure/AtomLineList.java, r1677)
added , text changed
Directorytrunk/src/owl/core/structure/io/PdbxPolySeqGroup.java
(Copied from trunk/src/owl/core/structure/PdbxPolySeqGroup.java, r1677)
added , text changed
Directorytrunk/src/owl/core/structure/io/PdbxPolySeqLine.java
(Copied from trunk/src/owl/core/structure/PdbxPolySeqLine.java, r1677)
added , text changed
Directorytrunk/src/owl/core/structure/io/PdbxPolySeqLineList.java
(Copied from trunk/src/owl/core/structure/PdbxPolySeqLineList.java, r1677)
added , text changed
Directorytrunk/src/owl/core/structure/io/SecStructureLine.java
(Copied from trunk/src/owl/core/structure/SecStructureLine.java, r1677)
added , text changed
Directorytrunk/src/pairwiseSeqId.java modified , text changed