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Author: hstehr
Date: Wed Mar 31 13:00:35 2010 UTC (9 years, 6 months ago)
Log Message:
refactoring: created packages runners.blast, runners.gromacs, structure.graphs, moved actionTools to util, structure.decoyScoring to owl.decoyScoring, tinker to runners.tinker

Changed paths

Path Details
Directorytrunk/src/actionTools/ deleted
Directorytrunk/src/averageGraph.java modified , text changed
Directorytrunk/src/casp/pipeline/RunAll.java modified , text changed
Directorytrunk/src/computeEnergies.java modified , text changed
Directorytrunk/src/owl/core/runners/blast/ added
Directorytrunk/src/owl/core/runners/gromacs/ added
Directorytrunk/src/owl/core/runners/tinker/
(Copied from trunk/src/tinker, r1002)
added
Directorytrunk/src/owl/core/runners/tinker/ConstraintsMaker.java
(Copied from trunk/src/tinker/ConstraintsMaker.java, r1005)
replaced , text changed
Directorytrunk/src/owl/core/runners/tinker/GromacsError.java modified , text changed
Directorytrunk/src/owl/core/runners/tinker/GromacsMDP.java modified , text changed
Directorytrunk/src/owl/core/runners/tinker/GromacsRunner.java modified , text changed
Directorytrunk/src/owl/core/runners/tinker/PRMInfo.java
(Copied from trunk/src/tinker/PRMInfo.java, r1005)
replaced , text changed
Directorytrunk/src/owl/core/runners/tinker/TinkerError.java modified , text changed
Directorytrunk/src/owl/core/runners/tinker/TinkerRunner.java
(Copied from trunk/src/tinker/TinkerRunner.java, r1005)
replaced , text changed
Directorytrunk/src/owl/core/structure/decoyScoring/ deleted
Directorytrunk/src/owl/core/structure/graphs/ added
Directorytrunk/src/owl/core/util/actionTools/
(Copied from trunk/src/actionTools, r1002)
added
Directorytrunk/src/owl/core/util/actionTools/Action.java modified , text changed
Directorytrunk/src/owl/core/util/actionTools/Checker.java modified , text changed
Directorytrunk/src/owl/core/util/actionTools/Doer.java modified , text changed
Directorytrunk/src/owl/core/util/actionTools/Getter.java modified , text changed
Directorytrunk/src/owl/core/util/actionTools/GetterError.java modified , text changed
Directorytrunk/src/owl/core/util/actionTools/Retriever.java modified , text changed
Directorytrunk/src/owl/core/util/actionTools/Runner.java modified , text changed
Directorytrunk/src/owl/core/util/actionTools/TinkerStatusNotifier.java modified , text changed
Directorytrunk/src/owl/core/util/actionTools/package-info.java modified , text changed
Directorytrunk/src/owl/decoyScoring/
(Copied from trunk/src/owl/core/structure/decoyScoring, r1005)
added
Directorytrunk/src/owl/decoyScoring/AtomCombinedScorer.java modified , text changed
Directorytrunk/src/owl/decoyScoring/AtomCountScorer.java modified , text changed
Directorytrunk/src/owl/decoyScoring/AtomTripletScorer.java modified , text changed
Directorytrunk/src/owl/decoyScoring/AtomTypeScorer.java modified , text changed
Directorytrunk/src/owl/decoyScoring/CountScorer.java modified , text changed
Directorytrunk/src/owl/decoyScoring/DecoyScore.java modified , text changed
Directorytrunk/src/owl/decoyScoring/DecoyScoreSet.java modified , text changed
Directorytrunk/src/owl/decoyScoring/DecoyScoreSetsGroup.java modified , text changed
Directorytrunk/src/owl/decoyScoring/DistanceScorer.java modified , text changed
Directorytrunk/src/owl/decoyScoring/GenerateSummaries.java modified , text changed
Directorytrunk/src/owl/decoyScoring/ResCombinedScorer.java modified , text changed
Directorytrunk/src/owl/decoyScoring/ResCountScorer.java modified , text changed
Directorytrunk/src/owl/decoyScoring/ResTripletScorer.java modified , text changed
Directorytrunk/src/owl/decoyScoring/ResTypeScorer.java modified , text changed
Directorytrunk/src/owl/decoyScoring/Scorer.java modified , text changed
Directorytrunk/src/owl/decoyScoring/ScoringMethod.java modified , text changed
Directorytrunk/src/owl/decoyScoring/TripletScorer.java modified , text changed
Directorytrunk/src/owl/decoyScoring/TypeScorer.java modified , text changed
Directorytrunk/src/reconstruct.java modified , text changed
Directorytrunk/src/runMD.java modified , text changed
Directorytrunk/src/sadp/SADP.java modified , text changed
Directorytrunk/src/scoreDecoys.java modified , text changed
Directorytrunk/src/scorePdbSet.java modified , text changed
Directorytrunk/src/tests/tinker/TinkerRunnerTest.java modified , text changed
Directorytrunk/src/tinker/ deleted