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Author: hstehr
Date: Wed Mar 31 13:27:18 2010 UTC (9 years, 4 months ago)
Log Message:
refactoring: moved casp, deltaRank, embed, graphAveraging, ppi, sadp to owl

Changed paths

Path Details
Directorytrunk/src/averageGraph.java modified , text changed
Directorytrunk/src/casp/benchmarking/ deleted
Directorytrunk/src/casp/pipeline/ deleted
Directorytrunk/src/casp/tools/ deleted
Directorytrunk/src/deltaRank/ deleted
Directorytrunk/src/embed/Bound.java deleted
Directorytrunk/src/embed/BoundsSmoother.java deleted
Directorytrunk/src/embed/Distiller.java deleted
Directorytrunk/src/embed/Embedder.java deleted
Directorytrunk/src/embed/Reconstructer.java deleted
Directorytrunk/src/embed/Scorer.java deleted
Directorytrunk/src/embed/SetScore.java deleted
Directorytrunk/src/embed/SparseMatrix.java deleted
Directorytrunk/src/embed/contactmaps/ deleted
Directorytrunk/src/graphAveraging/ deleted
Directorytrunk/src/litNet/ deleted
Directorytrunk/src/owl/casp/ added
Directorytrunk/src/owl/casp/benchmarking/
(Copied from trunk/src/casp/benchmarking, r1005)
added
Directorytrunk/src/owl/casp/benchmarking/Benchmarking.java modified , text changed
Directorytrunk/src/owl/casp/benchmarking/benchmarkAll.java modified , text changed
Directorytrunk/src/owl/casp/benchmarking/benchmarkOne.java modified , text changed
Directorytrunk/src/owl/casp/pipeline/
(Copied from trunk/src/casp/pipeline, r1005)
added
Directorytrunk/src/owl/casp/pipeline/RunAll.java
(Copied from trunk/src/casp/pipeline/RunAll.java, r1006)
replaced , text changed
Directorytrunk/src/owl/casp/pipeline/TargetToTemplatesAlignment.java modified , text changed
Directorytrunk/src/owl/casp/pipeline/TemplateSelection.java modified , text changed
Directorytrunk/src/owl/casp/pipeline/TemplatesAlignment.java modified , text changed
Directorytrunk/src/owl/casp/tools/
(Copied from trunk/src/casp/tools, r1005)
added
Directorytrunk/src/owl/casp/tools/DisplaySecStructMatching.java modified , text changed
Directorytrunk/src/owl/casp/tools/MapStru2Seq.java modified , text changed
Directorytrunk/src/owl/casp/tools/splitGTGFile.java modified , text changed
Directorytrunk/src/owl/core/runners/tinker/ConstraintsMaker.java modified , text changed
Directorytrunk/src/owl/core/runners/tinker/TinkerRunner.java modified , text changed
Directorytrunk/src/owl/core/structure/PairwiseAlignmentConverter.java modified , text changed
Directorytrunk/src/owl/core/structure/RIGEnsemble.java modified , text changed
Directorytrunk/src/owl/core/structure/SecondaryStructure.java modified , text changed
Directorytrunk/src/owl/deltaRank/
(Copied from trunk/src/deltaRank, r1005)
added
Directorytrunk/src/owl/deltaRank/DeltaRank.java modified , text changed
Directorytrunk/src/owl/embed/ added
Directorytrunk/src/owl/embed/Bound.java
(Copied from trunk/src/embed/Bound.java, r1005)
added , text changed
Directorytrunk/src/owl/embed/BoundsSmoother.java
(Copied from trunk/src/embed/BoundsSmoother.java, r1005)
added , text changed
Directorytrunk/src/owl/embed/Distiller.java
(Copied from trunk/src/embed/Distiller.java, r1005)
added , text changed
Directorytrunk/src/owl/embed/Embedder.java
(Copied from trunk/src/embed/Embedder.java, r1005)
added , text changed
Directorytrunk/src/owl/embed/Reconstructer.java
(Copied from trunk/src/embed/Reconstructer.java, r1005)
added , text changed
Directorytrunk/src/owl/embed/Scorer.java
(Copied from trunk/src/embed/Scorer.java, r1005)
added , text changed
Directorytrunk/src/owl/embed/SetScore.java
(Copied from trunk/src/embed/SetScore.java, r1005)
added , text changed
Directorytrunk/src/owl/embed/SparseMatrix.java
(Copied from trunk/src/embed/SparseMatrix.java, r1005)
added , text changed
Directorytrunk/src/owl/embed/contactmaps/
(Copied from trunk/src/embed/contactmaps, r1005)
added
Directorytrunk/src/owl/embed/contactmaps/CMDMErrorEvaluator.java modified , text changed
Directorytrunk/src/owl/embed/contactmaps/CMGrabber.java modified , text changed
Directorytrunk/src/owl/embed/contactmaps/CompareIndis.java modified , text changed
Directorytrunk/src/owl/embed/contactmaps/ComplexDouble.java modified , text changed
Directorytrunk/src/owl/embed/contactmaps/ComplexMatrix.java modified , text changed
Directorytrunk/src/owl/embed/contactmaps/ContactMap.java modified , text changed
Directorytrunk/src/owl/embed/contactmaps/ContactMapEvolver.java modified , text changed
Directorytrunk/src/owl/embed/contactmaps/ContactMapWeighted.java modified , text changed
Directorytrunk/src/owl/embed/contactmaps/ContactMatrix.java modified , text changed
Directorytrunk/src/owl/embed/contactmaps/ConvertErrorsToTextFile.java modified , text changed
Directorytrunk/src/owl/embed/contactmaps/CorrelationFunction.java modified , text changed
Directorytrunk/src/owl/embed/contactmaps/Demes.java modified , text changed
Directorytrunk/src/owl/embed/contactmaps/DistMatrix.java modified , text changed
Directorytrunk/src/owl/embed/contactmaps/Individuals.java modified , text changed
Directorytrunk/src/owl/embed/contactmaps/JavaFileCorrector.java modified , text changed
Directorytrunk/src/owl/embed/contactmaps/MergeOutPut.java modified , text changed
Directorytrunk/src/owl/embed/contactmaps/Metric2.java modified , text changed
Directorytrunk/src/owl/embed/contactmaps/NbhStringRanker.java modified , text changed
Directorytrunk/src/owl/embed/contactmaps/NeighbourhoodString.java modified , text changed
Directorytrunk/src/owl/embed/contactmaps/NextNeighbors.java modified , text changed
Directorytrunk/src/owl/embed/contactmaps/Numerical.java modified , text changed
Directorytrunk/src/owl/embed/contactmaps/Population1.java modified , text changed
Directorytrunk/src/owl/embed/contactmaps/PrintToFile.java modified , text changed
Directorytrunk/src/owl/embed/contactmaps/SetElement.java modified , text changed
Directorytrunk/src/owl/embed/contactmaps/SetRepresent.java modified , text changed
Directorytrunk/src/owl/embed/contactmaps/SortIntArray.java modified , text changed
Directorytrunk/src/owl/embed/contactmaps/Species.java modified , text changed
Directorytrunk/src/owl/embed/contactmaps/Stripper.java modified , text changed
Directorytrunk/src/owl/graphAveraging/
(Copied from trunk/src/graphAveraging, r1005)
added
Directorytrunk/src/owl/graphAveraging/ConsensusInterval.java modified , text changed
Directorytrunk/src/owl/graphAveraging/ConsensusSquare.java modified , text changed
Directorytrunk/src/owl/graphAveraging/GraphAverager.java modified , text changed
Directorytrunk/src/owl/graphAveraging/GraphAveragerError.java modified , text changed
Directorytrunk/src/owl/graphAveraging/PhiPsiAverager.java modified , text changed
Directorytrunk/src/owl/litNet/
(Copied from trunk/src/litNet, r1005)
added
Directorytrunk/src/owl/litNet/Article.java modified , text changed
Directorytrunk/src/owl/litNet/Journal.java modified , text changed
Directorytrunk/src/owl/litNet/LiteratureGraph.java modified , text changed
Directorytrunk/src/owl/litNet/Reference.java modified , text changed
Directorytrunk/src/owl/ppi/
(Copied from trunk/src/ppi, r1005)
added
Directorytrunk/src/owl/ppi/GOAnnotation.java modified , text changed
Directorytrunk/src/owl/ppi/PPIEdge.java modified , text changed
Directorytrunk/src/owl/ppi/PPIGraph.java modified , text changed
Directorytrunk/src/owl/ppi/PPINode.java modified , text changed
Directorytrunk/src/owl/sadp/
(Copied from trunk/src/sadp, r1005)
added
Directorytrunk/src/owl/sadp/ContactMap.java modified , text changed
Directorytrunk/src/owl/sadp/ContactMapConstructorError.java modified , text changed
Directorytrunk/src/owl/sadp/IOUtil.java modified , text changed
Directorytrunk/src/owl/sadp/SADP.java
(Copied from trunk/src/sadp/SADP.java, r1006)
replaced , text changed
Directorytrunk/src/ppi/ deleted
Directorytrunk/src/proteinstructure/ deleted
Directorytrunk/src/reconstruct.java modified , text changed
Directorytrunk/src/sadp/ deleted