ViewVC Help
| View Changeset | Root Listing
root/owl
Jump to revision: Previous Next
Author: jmduarteg
Date: Wed May 19 16:20:42 2010 UTC (9 years, 4 months ago)
Log Message:
Fixed bug in TcoffeeRunner. The t_coffee process was hanging after spawning. This didn't happen before, it can be related to the version of t_coffee (I'm using 8.14). Basically t_coffee seems to be doing something weird with stderr and stdout, java doesn't like it and makes the process hang (as usual java has a lot of problems in this area, see StreamGobbler class). The way to solve it is use the -quiet switch of t_coffee that can be used to redirect output to a file or have a complete quiet terminal.

Changed paths