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Revision 1.27 - (view) (annotate) - [select for diffs]
Tue Jul 7 18:52:50 2009 UTC (7 years ago) by amirkarger
Branch: MAIN
CVS Tags: HEAD
Changes since 1.26: +4 -4 lines
Diff to previous 1.26
* Tweak Makefile
* Add change_split_fasta tool (Change.pod, all_params)
* html2scriptome wasn't handling q{} correctly (tidy() broke it)
* Make t/*.pl use dated sample file dir
* Remove unneeded BEGIN from choose_lines_col_more_than_limit

Revision 1.16.2.4 - (view) (annotate) - [select for diffs]
Wed Jul 1 20:33:36 2009 UTC (7 years ago) by amirkarger
Branch: XML
Changes since 1.16.2.3: +8 -0 lines
Diff to previous 1.16.2.3 , to branch point 1.16 , to next main 1.27
- Put "first column is 0" in all tool descs
- Add xml target to Makefile

Revision 1.16.2.3 - (view) (annotate) - [select for diffs]
Fri Jun 26 02:43:32 2009 UTC (7 years, 1 month ago) by amirkarger
Branch: XML
Changes since 1.16.2.2: +64 -17 lines
Diff to previous 1.16.2.2 , to branch point 1.16
Makefile changes from main branch. Some of which we don't use but whatever
make works (except need to create lots of directories)
Commented out lines trying to copy all to /usr/local.
Should put back someday.

Revision 1.16.2.2 - (view) (annotate) - [select for diffs]
Mon May 11 13:12:21 2009 UTC (7 years, 2 months ago) by amirkarger
Branch: XML
Changes since 1.16.2.1: +4 -4 lines
Diff to previous 1.16.2.1 , to branch point 1.16
Changes from main branch ca. 2007
- Change Scriptome.pl to Scriptome
- Add ScriptPack

Revision 1.26 - (view) (annotate) - [select for diffs]
Thu Nov 15 21:56:14 2007 UTC (8 years, 8 months ago) by amirkarger
Branch: MAIN
Changes since 1.25: +38 -9 lines
Diff to previous 1.25
Old old changes.
Various updates to Makefile.
Remove an unneeded BEGIN from a choose_lines tool

Revision 1.16.2.1 - (view) (annotate) - [select for diffs]
Thu Aug 16 16:38:35 2007 UTC (8 years, 11 months ago) by amirkarger
Branch: XML
Changes since 1.16: +1 -1 lines
Diff to previous 1.16
- CSB_content: use absolute URLs for CVS non-Scriptome links
- html2xml:
-- slightly more sane. We now give infile & outfile, and code
  figures out root_dir etc. by looking at file names/paths.
-- slightly better handling of <example>s, but Merge still breaks
- Fetch: Remove silly link
- Merge: typo paren broke parsing
- Makefile: Just remove Thumbs.db file dependency
- make_test: typo

Revision 1.25 - (view) (annotate) - [select for diffs]
Thu Feb 22 17:20:51 2007 UTC (9 years, 5 months ago) by amirkarger
Branch: MAIN
Changes since 1.24: +7 -3 lines
Diff to previous 1.24
Make make prod and web_dev_dir work on Windows

Revision 1.24 - (view) (annotate) - [select for diffs]
Tue Feb 6 15:41:22 2007 UTC (9 years, 5 months ago) by amirkarger
Branch: MAIN
Changes since 1.23: +2 -2 lines
Diff to previous 1.23
Minor tweaks

Revision 1.23 - (view) (annotate) - [select for diffs]
Mon Jan 15 03:45:30 2007 UTC (9 years, 6 months ago) by amirkarger
Branch: MAIN
Changes since 1.22: +8 -2 lines
Diff to previous 1.22
Various tweaks.
Add image files to Makefile

Revision 1.22 - (view) (annotate) - [select for diffs]
Fri Jan 12 14:00:44 2007 UTC (9 years, 6 months ago) by amirkarger
Branch: MAIN
Changes since 1.21: +7 -2 lines
Diff to previous 1.21
Added Resources.pod page, which contains Scriptome executables download,
    as well as Mailing List stuff stolen from home page
Added creation of Scriptome_exe.tar.gz to Makefile.
Move around a bunch of stuff on the home page, and tweak the text to
    be maybe a bit more readable
bin/Scriptome: just updated examples in docs

Revision 1.21 - (view) (annotate) - [select for diffs]
Wed Jan 10 19:18:39 2007 UTC (9 years, 6 months ago) by amirkarger
Branch: MAIN
Changes since 1.20: +1 -1 lines
Diff to previous 1.20
New location for CSB dev website

Revision 1.20 - (view) (annotate) - [select for diffs]
Wed Jan 10 17:18:45 2007 UTC (9 years, 6 months ago) by amirkarger
Branch: MAIN
Changes since 1.19: +3 -0 lines
Diff to previous 1.19
chmod +x ScriptPack on UNIX

Revision 1.19 - (view) (annotate) - [select for diffs]
Wed Jan 10 16:49:18 2007 UTC (9 years, 6 months ago) by amirkarger
Branch: MAIN
Changes since 1.18: +3 -3 lines
Diff to previous 1.18
Windows bats (really just copies of ActiveState's runperl.bat) so we can
put Scriptome & ScriptPack somewhere in our path and call them transparently.

Revision 1.18 - (view) (annotate) - [select for diffs]
Wed Jan 10 01:19:44 2007 UTC (9 years, 6 months ago) by amirkarger
Branch: MAIN
Changes since 1.17: +1 -1 lines
Diff to previous 1.17
Updates for switch from CGR to FAS CSB.

Revision 1.17 - (view) (annotate) - [select for diffs]
Fri Jan 5 18:12:07 2007 UTC (9 years, 6 months ago) by amirkarger
Branch: MAIN
Changes since 1.16: +1 -1 lines
Diff to previous 1.16
Changes from 8/2006 (and a bit from 1/2007)
Added Information/Tips page
Changes in other files to handle that.
(Stylesheets: increase navbar subject font size)

Revision 1.16 - (view) (annotate) - [select for diffs]
Tue Jul 11 14:01:02 2006 UTC (10 years ago) by amirkarger
Branch: MAIN
Branch point for: XML
Changes since 1.15: +12 -3 lines
Diff to previous 1.15
Create ScriptPack.pl, which includes all the tools in a standalone executable.

Revision 1.15 - (view) (annotate) - [select for diffs]
Wed Apr 26 12:08:46 2006 UTC (10 years, 3 months ago) by amirkarger
Branch: MAIN
Changes since 1.14: +16 -7 lines
Diff to previous 1.14
Changes to work on Windows. Also add 'test' target

Revision 1.14 - (view) (annotate) - [select for diffs]
Mon Oct 17 05:04:01 2005 UTC (10 years, 9 months ago) by akarger
Branch: MAIN
CVS Tags: rel-1-0, rel-1-1
Branch point for: rel-1-0-patches, rel-1-0-perl-one-liners, rel-1-0-standalone
Changes since 1.13: +17 -18 lines
Diff to previous 1.13
Much simpler solution. Make a Platform dir. Everything in there
gets copied to UNIX and Windows (with slight changes)

Revision 1.13 - (view) (annotate) - [select for diffs]
Sun Oct 16 04:56:25 2005 UTC (10 years, 9 months ago) by akarger
Branch: MAIN
Changes since 1.12: +12 -25 lines
Diff to previous 1.12
Decided to name the platform-specific pages home.html
Fixed a bug (missing a / in addprefix commands)

Revision 1.12 - (view) (annotate) - [select for diffs]
Fri Oct 14 19:02:57 2005 UTC (10 years, 9 months ago) by akarger
Branch: MAIN
Changes since 1.11: +53 -30 lines
Diff to previous 1.11
Make some large scale changes to separate into unix & windows dirs
Still totally broken though.
I did create the right variables and targets for *.*, but still
haven't fixed the high-level index.html files

Revision 1.11 - (view) (annotate) - [select for diffs]
Wed Sep 28 18:09:28 2005 UTC (10 years, 10 months ago) by akarger
Branch: MAIN
Changes since 1.10: +16 -6 lines
Diff to previous 1.10
Protocols need a windows directory too

Revision 1.10 - (view) (annotate) - [select for diffs]
Mon Aug 15 21:02:49 2005 UTC (10 years, 11 months ago) by akarger
Branch: MAIN
Changes since 1.9: +5 -1 lines
Diff to previous 1.9
bug in pod2html call

Revision 1.9 - (view) (annotate) - [select for diffs]
Fri Aug 12 15:32:32 2005 UTC (10 years, 11 months ago) by akarger
Branch: MAIN
Changes since 1.8: +15 -6 lines
Diff to previous 1.8
Add IMAGES files to Makefile
Establish a bit more order in declaring all my variables

Revision 1.8 - (view) (annotate) - [select for diffs]
Fri Aug 12 15:09:30 2005 UTC (10 years, 11 months ago) by akarger
Branch: MAIN
Changes since 1.7: +35 -18 lines
Diff to previous 1.7
Create a dev_dir that has a copy of the website (same as WEB_DEV_DIR
but we need a copy that can be seen from Windows)

Revision 1.7 - (view) (annotate) - [select for diffs]
Thu Aug 11 14:07:28 2005 UTC (10 years, 11 months ago) by akarger
Branch: MAIN
Changes since 1.6: +19 -12 lines
Diff to previous 1.6
Add Stylesheet.css and Script.js.
Take prod_dir target out, since it will copy possibly unready stuff
  from .

Revision 1.6 - (view) (annotate) - [select for diffs]
Thu Aug 11 13:50:58 2005 UTC (10 years, 11 months ago) by akarger
Branch: MAIN
Changes since 1.5: +16 -5 lines
Diff to previous 1.5
Bug in pod2html --htmldir dirs
Add --norecurse. Otherwise, it finds and makes links to PODs in ./prod_dir!

Revision 1.5 - (view) (annotate) - [select for diffs]
Wed Aug 10 16:52:27 2005 UTC (10 years, 11 months ago) by akarger
Branch: MAIN
Changes since 1.4: +44 -12 lines
Diff to previous 1.4
Make another copy of the Tools/* in Windows_Tools/*, but run
html2scriptome -w on those files.
Also, separate the copy to dev from the make step for each tool

Revision 1.4 - (view) (annotate) - [select for diffs]
Wed Jun 8 20:06:45 2005 UTC (11 years, 1 month ago) by akarger
Branch: MAIN
Changes since 1.3: +10 -2 lines
Diff to previous 1.3
Fix prod_dir target. It was copying one file to ALL filenames.

Revision 1.3 - (view) (annotate) - [select for diffs]
Thu May 26 17:16:50 2005 UTC (11 years, 2 months ago) by akarger
Branch: MAIN
Changes since 1.2: +59 -15 lines
Diff to previous 1.2
GNU make magic.
Create pre_html files from pod2html, run html2scriptome on them.
Put COPIES of html files into WEB_DEV, not originals
Also created a new target, prod_dir, that will copy everything currently
  in WEB_DEV into ./prod_dir. We can then run the new copy_to_prod.pl
  (from the Windows side) to copy the whole prod website over.

Revision 1.2 - (view) (annotate) - [select for diffs]
Wed May 11 20:04:26 2005 UTC (11 years, 2 months ago) by akarger
Branch: MAIN
Changes since 1.1: +22 -11 lines
Diff to previous 1.1
Put things in separate directories.
Include step of copying to /usr/local/tmp

Revision 1.1 - (view) (annotate) - [select for diffs]
Thu Mar 31 20:26:24 2005 UTC (11 years, 4 months ago) by akarger
Branch: MAIN
Initial revision

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