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Revision 38 - Directory Listing
Modified Tue Dec 30 23:28:02 2014 UTC (18 months, 3 weeks ago) by jmeppley
Adding support of CAF files
Revision 37 - Directory Listing
Modified Sun Dec 22 02:03:45 2013 UTC (2 years, 7 months ago) by jmeppley
Generalized ACE file parsing to ather variants
Revision 36 - Directory Listing
Modified Wed Nov 20 14:35:06 2013 UTC (2 years, 8 months ago) by jmeppley
Fixed illumina mate pair finding
Revision 35 - Directory Listing
Modified Wed Nov 13 01:29:42 2013 UTC (2 years, 8 months ago) by jmeppley
don't check scores for SAM
Revision 34 - Directory Listing
Modified Sat Oct 26 03:19:53 2013 UTC (2 years, 9 months ago) by jmeppley
Added SAM support
Revision 33 - Directory Listing
Modified Fri Aug 6 11:42:27 2010 UTC (5 years, 11 months ago) by jmeppley
exports something approaching ACE format
Revision 32 - Directory Listing
Modified Wed Jun 30 19:41:11 2010 UTC (6 years ago) by jmeppley
don't draw objects offscreen
Revision 31 - Directory Listing
Modified Fri Jun 25 19:52:53 2010 UTC (6 years, 1 month ago) by jmeppley
strains from file
Revision 30 - Directory Listing
Modified Wed Jun 9 14:17:33 2010 UTC (6 years, 1 month ago) by jmeppley
another fix to ace re-alignment
Revision 29 - Directory Listing
Modified Wed Jun 2 23:58:17 2010 UTC (6 years, 1 month ago) by jmeppley
Fixing some big alignment errors
Revision 28 - Directory Listing
Modified Thu May 20 16:47:37 2010 UTC (6 years, 2 months ago) by jmeppley
fix order of bases in diff tooltips for gap, adjusted jalign params
Revision 27 - Directory Listing
Modified Wed May 19 16:06:32 2010 UTC (6 years, 2 months ago) by jmeppley
Increased speed of ace realignments
Revision 26 - Directory Listing
Modified Tue May 11 11:30:15 2010 UTC (6 years, 2 months ago) by jmeppley
Changing code to handle diuplicate read names
Revision 25 - Directory Listing
Modified Tue Mar 9 15:23:28 2010 UTC (6 years, 4 months ago) by jmeppley
fixed gap letter placement, fixed path saving accross sessions
Revision 24 - Directory Listing
Modified Tue Mar 9 14:43:06 2010 UTC (6 years, 4 months ago) by jmeppley
Improvements to ACE import, attempt to store CWD between sessions, fix gap diff colors
Revision 23 - Directory Listing
Modified Fri Mar 5 15:19:32 2010 UTC (6 years, 4 months ago) by jmeppley
upgraded to biojava 1.7, fixed some parsing bugs
Revision 22 - Directory Listing
Modified Mon Sep 14 12:55:19 2009 UTC (6 years, 10 months ago) by jmeppley
 
Revision 21 - Directory Listing
Modified Thu Dec 11 20:32:29 2008 UTC (7 years, 7 months ago) by jmeppley
imort of multiple sequence alignments
Revision 20 - Directory Listing
Modified Wed Sep 10 20:31:05 2008 UTC (7 years, 10 months ago) by jmeppley
remove old code:

Revision 19 - Directory Listing
Modified Wed Sep 10 19:28:39 2008 UTC (7 years, 10 months ago) by jmeppley
reverse blast fixes
Revision 18 - Directory Listing
Modified Wed Sep 10 18:41:07 2008 UTC (7 years, 10 months ago) by jmeppley
two new features: letters and reverse blast sense
Revision 17 - Directory Listing
Modified Tue Sep 9 19:36:04 2008 UTC (7 years, 10 months ago) by jmeppley
draw letters is working, could be prettier
Revision 16 - Directory Listing
Modified Fri Sep 5 16:26:06 2008 UTC (7 years, 10 months ago) by jmeppley
now draws letters over ticks when zoomed in
Revision 15 - Directory Listing
Modified Wed Sep 3 13:03:37 2008 UTC (7 years, 10 months ago) by jmeppley
unfinished letter writing code
Revision 14 - Directory Listing
Modified Mon Jul 7 20:09:58 2008 UTC (8 years ago) by jmeppley
improved comment, new buld no
Revision 13 - Directory Listing
Modified Fri Apr 4 17:47:27 2008 UTC (8 years, 3 months ago) by jmeppley
extend MP name types and fix ACE bug
Revision 12 - Directory Listing
Modified Tue Feb 5 20:20:20 2008 UTC (8 years, 5 months ago) by jmeppley
re-align option
Revision 11 - Directory Listing
Modified Wed Dec 26 03:34:05 2007 UTC (8 years, 7 months ago) by jmeppley
 allow user to opt out of mate pair links
Revision 10 - Directory Listing
Modified Fri Nov 2 02:33:26 2007 UTC (8 years, 8 months ago) by jmeppley
reduce RAM usage
Revision 9 - Directory Listing
Modified Wed Oct 31 14:05:55 2007 UTC (8 years, 8 months ago) by jmeppley
improved memory usage instructions
Revision 8 - Directory Listing
Modified Wed Oct 17 17:13:03 2007 UTC (8 years, 9 months ago) by jmeppley
ignore 'n's when counting diffs (plus some cleanup)
Revision 7 - Directory Listing
Modified Mon Oct 15 20:29:24 2007 UTC (8 years, 9 months ago) by jmeppley
added boiler plate to code
Revision 6 - Directory Listing
Modified Mon Oct 15 19:44:11 2007 UTC (8 years, 9 months ago) by jmeppley
updated license files
Revision 5 - Directory Listing
Modified Mon Oct 15 19:37:31 2007 UTC (8 years, 9 months ago) by jmeppley
added license files
Revision 4 - Directory Listing
Modified Mon Oct 15 18:44:34 2007 UTC (8 years, 9 months ago) by jmeppley
changing version number
Revision 3 - Directory Listing
Modified Mon Oct 15 17:48:26 2007 UTC (8 years, 9 months ago) by jmeppley
fixed read alignemnts and qual imports
Revision 2 - Directory Listing
Modified Thu Oct 11 12:09:12 2007 UTC (8 years, 9 months ago) by jmeppley
split overlapping mate-pairs across 2 rows
Revision 1 - Directory Listing
Added Fri Aug 31 11:43:32 2007 UTC (8 years, 10 months ago) by jmeppley
importing version 0.9.1