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#!/usr/bin/perl -w |
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|
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############################################## |
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############################################## |
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# SCRIPT NAME: summarizer |
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# FUNCTION: get files and make links in a very simple webpage |
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# AUTHOR: Cared for by Gareth Wilson (gawi@ceh.ac.uk) |
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############################################## |
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|
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|
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# Version v 0.1 |
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use strict; |
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use Config::Simple; |
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|
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|
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unless (@ARGV ==1) { |
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die "\n\nUsage:\n ./quickmine.pl file.cfg\nPlease try again.\n\n\n";} |
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|
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|
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# pick up the name of the config file |
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my $config_file = shift; |
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|
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# create a new object containing the variables in the cfg file |
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my $cfg = new Config::Simple($config_file); |
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|
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# initialize the variables shared with the config file |
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my $path2proteins = $cfg->param('PATHS.path2proteins'); |
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my $path2output = $cfg->param('PATHS.path2output'); |
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my $stylesheet = $cfg->param('PARAMS.stylesheet'); |
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|
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# files ending in.... |
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my @file_types = ( |
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"gene_table.html", |
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"QM.html", |
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"overview.html", |
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"prot", |
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"matrix.html", |
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"scores.html", |
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"rank.html", |
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"hits.html", |
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"tophit.html", |
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"list.html", |
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"count.html", |
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"orphans.html", |
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"size.html", |
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"para.html", |
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"increment.html", |
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"time.html", |
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"binary.html", |
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"plot.html", |
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"synteny.html" |
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); |
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|
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chdir $path2output; |
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my ($file, $date, $new_file) = ""; |
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open(DATE, "date|"); |
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$date = <DATE>; |
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close(DATE); |
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print <<HTML; |
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<html> |
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<head> |
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<title>Untitled Document</title> |
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<meta http-equiv="Content-Type" content="text/html; charset=iso-8859-1"> |
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<link rel="stylesheet" href="$stylesheet" type="text/css"> |
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|
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</head> |
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|
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<body bgcolor="#FFFFFF" text="#000000"> |
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|
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Files summarized from: $path2output on $date<P> |
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HTML |
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|
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|
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foreach $file (@file_types) { |
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my @new_files = <*$file>; |
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foreach $new_file (@new_files) { |
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print "<a href=\"$new_file\">$new_file</a><br>"; |
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} |
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} |
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|
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print <<HTML; |
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</body> |
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</html> |
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HTML |
