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root/yamap/yamap_paths.ini
Revision: 1.10
Committed: Fri Dec 14 13:51:38 2007 UTC (8 years, 5 months ago) by gawi79
Branch: MAIN
CVS Tags: HEAD
Changes since 1.9: +1 -1 lines
Log Message:
Used in YAMAP v1.02

Line File contents
1 [VERSION]
2 version=1.0.2
3
4 [PROCESSING]
5 dbblast=/usr/local/bin/blastall
6 bigblast=/usr/local/bin/big_blast.pl
7 formatdb=/usr/local/bin/formatdb
8 einverted=/usr/local/bioinf/EMBOSS/EMBOSS/emboss/bin/einverted
9 etandem=/usr/local/bioinf/EMBOSS/EMBOSS/emboss/bin/etandem
10 palindrome=/usr/local/bioinf/EMBOSS/EMBOSS/emboss/bin/palindrome
11 trnascan=/usr/local/bin/tRNAscan-SE
12 msatfinder=/usr/local/bin/msatfinder
13 longorfs=/usr/local/bin/long-orfs
14 extract=/usr/local/bin/extract
15 build_icm=/usr/local/bin/build-icm
16 glimmer=/usr/local/bin/glimmer2
17 rbs=/usr/local/bin/rbs_finder.pl
18 artemis=/usr/local/bin/art
19 mspcrunch=/usr/local/bin/mspcrunch
20 pfam=/usr/local/bioinf/yamap/yamap/bin/pfam_scan.pl
21 transterm=/usr/local/bin/transterm-hp
22
23 [PARSING]
24 dbblast=/usr/local/bioinf/yamap/yamap/bin/blast_parse_artemis.pl
25 einverted=/usr/local/bioinf/yamap/yamap/bin/einverted_parse_artemis.pl
26 etandem=/usr/local/bioinf/yamap/yamap/bin/etandem_parse_artemis.pl
27 palindrome=/usr/local/bioinf/yamap/yamap/bin/palindrome_parse_artemis.pl
28 trnascan=/usr/local/bioinf/yamap/yamap/bin/tRNA_parse_artemis.pl
29 msatfinder=/usr/local/bin/msatfinder
30 glimmer=/usr/local/bioinf/yamap/yamap/bin/glimmer_parse_artemis.pl
31 rbs=/usr/local/bioinf/yamap/yamap/bin/rbs_parse_artemis.pl
32 pfam=/usr/local/bioinf/yamap/yamap/bin/parse_pfam.pl
33 transterm=/usr/local/bioinf/yamap/yamap/bin/parse_transterm.pl
34 quickmine=/usr/local/bioinf/yamap/yamap/bin/quickmine_parse_artemis.pl